Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c06
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical ...    31   0.63 
AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical ...    31   0.63 
AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical ...    30   1.5  
AL032631-12|CAA21576.1|  138|Caenorhabditis elegans Hypothetical...    30   1.5  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    30   1.9  
AL034488-7|CAA22452.1|  396|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AF036698-1|AAB88352.1|  425|Caenorhabditis elegans Hypothetical
           protein B0273.3 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 397 RSLDYAYPSLVPLDSETHGGEDVAVFALG-PWQHLFTASYDQSVVPHLMAYA-MCLTDDQ 224
           +  DY  P  V   SET  G+   +  LG P+ ++      Q V  HL+ +  +CL D+ 
Sbjct: 284 KKFDYIGPMHVKQMSETRIGD--LICRLGQPYVYIH-----QGVCEHLIVFNDLCLRDES 336

Query: 223 HQNCHQPERLTE 188
           H N   P RL E
Sbjct: 337 HTNVEFPRRLVE 348


>AC024794-6|AAK68493.2|  425|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.1 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 397 RSLDYAYPSLVPLDSETHGGEDVAVFALG-PWQHLFTASYDQSVVPHLMAYA-MCLTDDQ 224
           +  DY  P  V   SET  G+   +  LG P+ ++      Q V  HL+ +  +CL D+ 
Sbjct: 284 KKFDYIGPMHVKQMSETRIGD--LICRLGQPYVYIH-----QGVCEHLIVFNDLCLRDES 336

Query: 223 HQNCHQPERLTE 188
           H N   P RL E
Sbjct: 337 HTNVEFPRRLVE 348


>AL132847-4|CAB63373.3|  965|Caenorhabditis elegans Hypothetical
           protein Y48G10A.4 protein.
          Length = 965

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 301 HLFTASYDQSVVPHLMAYAMCL 236
           HLF+   DQ VV  L+AYA+CL
Sbjct: 714 HLFSLIRDQRVVDFLLAYAVCL 735


>AL032631-12|CAA21576.1|  138|Caenorhabditis elegans Hypothetical
           protein Y106G6H.13 protein.
          Length = 138

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = -2

Query: 655 YAKAVRKARSLTDESETLIVVSSDHAHTMTVAGYPSRGNDILGVVDTTNGGDGRPYTTIS 476
           Y ++     SL  +++ L    SD      +A  P  G+ I+ +VD+    + R +    
Sbjct: 3   YVESFYMDASLESDADVLPASESDMFEAQFIADVPLDGDAIIRIVDSQLAFEQRNHVVSD 62

Query: 475 YANGKAASID 446
           Y   KAA ++
Sbjct: 63  YCTMKAAELE 72


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
            complex protein protein8, isoform b protein.
          Length = 1090

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 332  VLAAVGLRVQRH--ETWVRVIQATLRKSFFLRNVDSEPVRVNG 454
            +L   G+ V++H  ETW  +IQ  +  S+  R    EPV + G
Sbjct: 947  LLHCAGMYVEKHIFETWEDIIQDAIASSYAQRRTSFEPVVMPG 989


>AL034488-7|CAA22452.1|  396|Caenorhabditis elegans Hypothetical
           protein Y54G11A.8a protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = -1

Query: 581 RPHHDRGRLPVQRQRHPGRGGHDE---RWRR 498
           R HH  GR   Q  RH G GG      RW R
Sbjct: 26  RQHHSSGRSRQQHHRHGGSGGKTNGGGRWSR 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,684
Number of Sequences: 27780
Number of extensions: 257474
Number of successful extensions: 798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)