Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17c06
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    24   1.7  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    24   1.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.9  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.9  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   8.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.9  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 391 LDYAYPSLVPLDSETHGGEDVA 326
           ++Y  P ++P   E H  ED+A
Sbjct: 30  MEYLMPDIMPCADELHISEDIA 51


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 391 LDYAYPSLVPLDSETHGGEDVA 326
           ++Y  P ++P   E H  ED+A
Sbjct: 30  MEYLMPDIMPCADELHISEDIA 51


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 554 PVQRQRHPGRGGHDERWRRKTLHYDQLRK 468
           P  RQ  P R     R RR+T  Y+ + K
Sbjct: 394 PPPRQTPPSRKESGRRRRRRTPRYNSVSK 422


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 587 RPRPHHDRGRLPVQRQRHPG 528
           +PRP H R R   + +  PG
Sbjct: 80  QPRPPHPRLRREAESEAEPG 99


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 462 KPLPLTRTGSESTLRRKKDLRSVAW 388
           +P    +T S++ + RKK L SV W
Sbjct: 48  RPREPAQTTSKAGIHRKKVLLSVWW 72


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 462 KPLPLTRTGSESTLRRKKDLRSVAW 388
           +P    +T S++ + RKK L SV W
Sbjct: 170 RPREPAQTTSKAGIHRKKVLLSVWW 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,738
Number of Sequences: 438
Number of extensions: 3522
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)