Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b23
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    30   0.44 
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    28   1.8  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   2.3  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    27   2.3  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   5.4  

>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 656 TKYFDFDTDLYPATVIRSIAKEKWSREYFELLKTAHQSHYEQF 528
           +K+ D  +D+YP  +I  + K  W  EY + L     S  + F
Sbjct: 272 SKHVDSFSDVYPTCIIHILEKGIWGPEYIKFLSHPKFSRAQHF 314


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 85  RPGMLLTVNLQNLSTIRASHSSD 153
           RP +    N QNLST+ +SHSS+
Sbjct: 61  RPPIANDENAQNLSTVNSSHSSE 83


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +1

Query: 493 SSPILNLHFKLPNCS*CDW*AVLSNSKYSLL---HFSLAIDLMTVAGYKSVSKSKYFVVA 663
           SS + N +  LP C   +   +  ++ Y  +   H   A+ ++++   ++  K KYF + 
Sbjct: 435 SSAVFNFNVALPTCLVKERDRLTFDTTYKYIKVRHRLKALLVLSIENTENPEKRKYFEIN 494

Query: 664 VHSPVKSTS 690
           + +PV+  S
Sbjct: 495 IETPVRILS 503


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 432 DSYVPICFPSYLFGRRHQHQRWSHLPAIYCFRV*SRLDSL 313
           +S + I  P Y   +R Q  RWSH    + F + + LD L
Sbjct: 148 ESDLDIIMPGYTHLQRAQPIRWSHFLLSHAFSILNDLDRL 187


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 383 TSISVGVICQPSTASVFEAGWIALPNKESYPVKWV 279
           T  +V  +  P+ A+ F  G+  LPN  + PVK V
Sbjct: 84  TGYNVSRVTSPNVAN-FAPGYFPLPNNTTQPVKTV 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,638,762
Number of Sequences: 5004
Number of extensions: 81886
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)