Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b23
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878 30 2.4
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223... 29 3.2
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 29 3.2
01_03_0168 - 13397297-13397756,13397852-13397917,13397999-13398111 29 5.6
10_08_0179 + 15483854-15483968,15484196-15484302,15485211-154853... 28 7.4
09_06_0196 - 21481662-21481720,21481898-21483245 28 7.4
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 28 9.8
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 28 9.8
01_07_0336 - 42833205-42834926 28 9.8
>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
Length = 474
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 737 SYKGQMWYQNNPSKFVDVDFTGEWTATTKYFDFDTDLYPA 618
SY +YQ N + V DF G TTK +DT +Y A
Sbjct: 410 SYAFNSYYQQNGANDVACDFGGTGVRTTKDPSYDTCVYMA 449
>06_01_0309 -
2233573-2234556,2234670-2234721,2235406-2236391,
2237790-2238050
Length = 760
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 331 SNTEAVDGWQMTPTLMLVPSSKKI*WKAYRYIRVQSRLW 447
S+ E + GW+++P ++ K WKA R I Q R++
Sbjct: 383 SSVECITGWEISPDKIVGAIGTKHFWKARRAIMNQQRVF 421
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 595 LAIDLMTVAGYKSVSKSKYFVVAVHSPVKSTSTNLLGLFWYHIC 726
LA+D++TV V+++K VV V+ N G WY C
Sbjct: 968 LAVDVVTVVVESRVARAKETVVLVYLKCYRKQLNFCGNKWYSKC 1011
>01_03_0168 - 13397297-13397756,13397852-13397917,13397999-13398111
Length = 212
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 597 GY*PDDGRRIQICVEIKVFRSGCPLSGEVHIDKLTGVVLVPHLSLVRDIPLLHRFNRCHL 776
G+ +D R I V R+GC + V ++++ G + L L + +L CHL
Sbjct: 121 GFRTNDKRDPLIKTPRAVTRTGCKVHMGVTLNRVLGKYEIHDLVLEHN-QILQTLETCHL 179
Query: 777 DPLQRR 794
P QRR
Sbjct: 180 LPSQRR 185
>10_08_0179 +
15483854-15483968,15484196-15484302,15485211-15485304,
15485537-15485637,15486143-15486199,15486614-15486761,
15486982-15487049
Length = 229
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 315 GYPTGFKHGSSRWLADDSNADAGAVFQKDMMESISVHKS 431
G+ G + G W A + A A A+F D+ E+I + S
Sbjct: 10 GWRKGLEEGEPEWEAMELEAAAPAIFPADVKEAIGTYIS 48
>09_06_0196 - 21481662-21481720,21481898-21483245
Length = 468
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 622 GYKSVSKSKYFVVAVHSPVKSTSTNL-LGLFWYHICPL 732
G VS F + SP STS+NL LG+++ I PL
Sbjct: 36 GSTVVSNGGAFALGFFSPTNSTSSNLYLGIWYNDISPL 73
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 568 SKYSLLHFSLAIDLMTVAGY--KSVSKSKYFVVAVHSPVKSTSTNLLGLFW 714
S YSL HF+LA + S+S + +++ SPV S T+ L + W
Sbjct: 65 SAYSLRHFALAKAMGQPRAQLLPSMSMAALYLILATSPVISDMTDSLDMLW 115
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/69 (33%), Positives = 32/69 (46%)
Frame = -1
Query: 767 PVEPMKKWNISYKGQMWYQNNPSKFVDVDFTGEWTATTKYFDFDTDLYPATVIRSIAKEK 588
PVEPM W +KG + Q +K V +T T + D DT L I + +
Sbjct: 835 PVEPMDPWYRGFKGSI--QKTGTKAGGVSYT--VTGIIEVVD-DTTLR----ITELPIRR 885
Query: 587 WSREYFELL 561
WS++Y E L
Sbjct: 886 WSQDYKEFL 894
>01_07_0336 - 42833205-42834926
Length = 573
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 279 HPFHGI*LFVWQGYPTGFKHGS 344
HP + F W G G+KHGS
Sbjct: 186 HPIKALAFFRWAGRQIGYKHGS 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,978,247
Number of Sequences: 37544
Number of extensions: 555740
Number of successful extensions: 1464
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -