Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b23
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical ... 138 6e-33
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 35 0.077
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 29 5.1
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 29 5.1
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 29 5.1
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z75712-11|CAB00044.2| 257|Caenorhabditis elegans Hypothetical p... 28 6.7
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 28 6.7
AY753200-1|AAV31408.1| 402|Caenorhabditis elegans UNC-89 protein. 28 6.7
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 28 6.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 28 6.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 28 6.7
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 28 6.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 28 6.7
>AF047651-6|AAC02725.3| 426|Caenorhabditis elegans Hypothetical
protein C05D2.8 protein.
Length = 426
Score = 138 bits (333), Expect = 6e-33
Identities = 82/257 (31%), Positives = 121/257 (47%), Gaps = 16/257 (6%)
Frame = -1
Query: 782 GIKMTPVEPMKKWNISYKGQM--------WYQNNPS------KFVDVDFTGEWTATTKYF 645
G ++ +EPMKKW I + G++ + +N K D +F WT F
Sbjct: 166 GFIVSCIEPMKKWRIQFNGKLASAPGKINFIKNGSEEMKDGIKIFDANFDLTWTNFGNQF 225
Query: 644 DFDTDLYPATVIRSIAKEKWSREYFELLKTAHQSHYEQFGNLKCKFKIGEESFE-YTLPS 468
DFD P + S+A E WSR F+ ++ +HQSHYEQFG + F+IG + + S
Sbjct: 226 DFDKMCSPTAIAHSLAIEPWSRGLFDKMRASHQSHYEQFGTISGDFRIGNHTASGIRMTS 285
Query: 467 FRDHSFGHKRDWTLMYRYAFHHIFLEDGTSISVGVICQPSTA-SVFEAGWIALPNKESYP 291
RDH+ R W+ + RY LEDGT + VI P T S E G+I P E+ P
Sbjct: 286 MRDHTIAGYRRWSDIRRYIMMIYHLEDGTCVHTSVISMPETVFSHLEFGYIVTPTGETKP 345
Query: 290 VKWVDLKLYQHGEGGQAPKDYAFQFKAGDEEYTVQVLVEYESIHYVSDEWDARMVERFCK 111
V V L HGE P D+ + F+ + + V ++ + + ++ E +
Sbjct: 346 VDRVHFSLPNHGEDRHFPDDFHYSFEVDGKIHHADVHIKEAVSFKMGLDQACQVTEGMSE 405
Query: 110 FTVNNIPGRGVSEFHYR 60
F V+ PG G +E YR
Sbjct: 406 FVVDGKPGWGFAEVEYR 422
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 709 TTPVSLSMWTSPESGQPLRNTLISTQICILRPSSGQ*PKK 590
TTPVS P+ G+P +NT ++T + + S G+ P+K
Sbjct: 922 TTPVSSMAAAPPKKGRPRKNTTVTTPVLSVPKSEGRGPRK 961
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
protein F55H12.3 protein.
Length = 2972
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 250 PSPCWYNFKSTHFTGYDSLFGKAIQPASNTEAVDGWQMTPTLMLVPSSKK 399
P PC Y FK+ HF Y ++ +Q T++L PSS K
Sbjct: 426 PIPCHYTFKTQHFNSYIAVL---VQKCEGLNPATIQYNNSTVILPPSSFK 472
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
ZK1067.1 protein.
Length = 1323
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 396 FGRRHQHQRWSHLPAIYCFRV*SRLDSLAKQRVISREMGGFEVI 265
F + H+ + +YC+++ S + L KQRV+ R++ V+
Sbjct: 974 FLKLHKENLGAREQVLYCYQIASGMQYLEKQRVVHRDLATRNVL 1017
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 396 FGRRHQHQRWSHLPAIYCFRV*SRLDSLAKQRVISREMGGFEVI 265
F + H+ + +YC+++ S + L KQRV+ R++ V+
Sbjct: 974 FLKLHKENLGAREQVLYCYQIASGMQYLEKQRVVHRDLATRNVL 1017
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -3
Query: 396 FGRRHQHQRWSHLPAIYCFRV*SRLDSLAKQRVISREMGGFEVI 265
F + H+ + +YC+++ S + L KQRV+ R++ V+
Sbjct: 1025 FLKLHKENLGAREQVLYCYQIASGMQYLEKQRVVHRDLATRNVL 1068
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 244 CPPSPCWYNFKST-HFTGYDSLFGKAIQPASNTEAVD 351
C P PC YN T F GYD + A+ +E +D
Sbjct: 465 CTPDPCKYNSTCTPKFKGYDCTCLTGLTGANCSEIID 501
>Z75712-11|CAB00044.2| 257|Caenorhabditis elegans Hypothetical
protein K04G2.7 protein.
Length = 257
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 170 ESIHYVSDEWDARMVERFCKFTVNNIPGRGVSEFHYRH 57
+S ++ DEW R + R C F V++ R ++ F +H
Sbjct: 48 QSTQHIGDEWMRREIRRICGFDVSD---RWINLFRKKH 82
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 78 FGVPLPTYRWS 46
FG+PLPTY WS
Sbjct: 1164 FGIPLPTYEWS 1174
>AY753200-1|AAV31408.1| 402|Caenorhabditis elegans UNC-89 protein.
Length = 402
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 78 FGVPLPTYRWS 46
FG+PLPTY WS
Sbjct: 130 FGIPLPTYEWS 140
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 78 FGVPLPTYRWS 46
FG+PLPTY WS
Sbjct: 1164 FGIPLPTYEWS 1174
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 78 FGVPLPTYRWS 46
FG+PLPTY WS
Sbjct: 1164 FGIPLPTYEWS 1174
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 78 FGVPLPTYRWS 46
FG+PLPTY WS
Sbjct: 1164 FGIPLPTYEWS 1174
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 78 FGVPLPTYRWS 46
FG+PLPTY WS
Sbjct: 1164 FGIPLPTYEWS 1174
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 78 FGVPLPTYRWS 46
FG+PLPTY WS
Sbjct: 1164 FGIPLPTYEWS 1174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,182,556
Number of Sequences: 27780
Number of extensions: 463301
Number of successful extensions: 1273
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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