Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b21
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical ... 208 2e-54
AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical ... 204 4e-53
U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical pr... 178 4e-45
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 162 3e-40
U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical pr... 131 5e-31
Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical pr... 124 6e-29
U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical pr... 109 2e-24
U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical pr... 108 3e-24
Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical pr... 105 2e-23
U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical pr... 102 2e-22
Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical pr... 94 1e-19
Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical pr... 71 6e-13
U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical pr... 49 4e-06
AC006627-8|AAK85458.1| 276|Caenorhabditis elegans Hypothetical ... 42 4e-04
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 31 0.60
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 30 1.8
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 29 2.4
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 29 2.4
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 2.4
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 3.2
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 3.2
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 3.2
AL032644-4|CAA21665.1| 490|Caenorhabditis elegans Hypothetical ... 29 3.2
Z71266-4|CAA95843.1| 478|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical p... 27 9.8
Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical p... 27 9.8
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 9.8
AL132948-39|CAI79178.1| 380|Caenorhabditis elegans Hypothetical... 27 9.8
AL132948-38|CAD31811.1| 378|Caenorhabditis elegans Hypothetical... 27 9.8
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 27 9.8
>AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1b protein.
Length = 316
Score = 208 bits (509), Expect = 2e-54
Identities = 101/216 (46%), Positives = 139/216 (64%), Gaps = 2/216 (0%)
Frame = -2
Query: 695 VQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSN 516
+ Y+DL LIHWPQ Y E LFP ++GK+++SDVDY++TWKA E K G +SIG+SN
Sbjct: 102 LSYVDLMLIHWPQGYAEGAELFPAGENGKMRYSDVDYLETWKAFEAAQKAGKCRSIGLSN 161
Query: 515 FNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKP 336
F Q++R+ A VKP QVE HPY Q +L+EFC+ +G+ + YSPLG+P + +
Sbjct: 162 FTHSQIQRVWDAAEVKPACLQVELHPYFTQVKLREFCKEKGIVVVGYSPLGNPGSAFFRK 221
Query: 335 D-DPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLS 159
D DP ++ + + IA GKT AQ+++R+ +DSG IPKSVT RI N V+DF+LS
Sbjct: 222 DGDPNVLTNEVVAGIAKAHGKTPAQIILRWFVDSGLSAIPKSVTPQRIIENISVIDFQLS 281
Query: 158 REDVALIDSFDCGGRLV-PMTASLGHKHHPFENEEF 54
E++ ID + G RLV P HK+ F NEEF
Sbjct: 282 AEEIQAIDGVNRGWRLVDPSPRDGDHKYFGF-NEEF 316
>AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1a protein.
Length = 316
Score = 204 bits (499), Expect = 4e-53
Identities = 96/214 (44%), Positives = 138/214 (64%), Gaps = 2/214 (0%)
Frame = -2
Query: 695 VQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSN 516
+ Y+DL LIHWPQ Y E LFP ++GK+++SDVDY++TWKA E K G +SIG+SN
Sbjct: 102 LSYVDLMLIHWPQGYAEGAELFPAGENGKMRYSDVDYLETWKAFEAAQKAGKCRSIGLSN 161
Query: 515 FNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKP 336
F Q++R+ A VKP QVE HPY Q +L+EFC+ +G+ + YSPLG+P + +
Sbjct: 162 FTHSQIQRVWDAAEVKPACLQVELHPYFTQVKLREFCKEKGIVVVGYSPLGNPGSAFFRK 221
Query: 335 D-DPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLS 159
D DP ++ + + IA GKT AQ+++R+ +DSG IPKSVT RI+ N V DF+L+
Sbjct: 222 DGDPNVLTNEVVAGIAKAHGKTPAQIILRWFVDSGLSAIPKSVTPQRISENLAVFDFQLT 281
Query: 158 REDVALIDSFDCGGRLVPMTASLG-HKHHPFENE 60
E+++ ID + R+V ++ G H H PF E
Sbjct: 282 AEEISKIDGINKNWRIVDLSQRDGDHPHCPFLEE 315
>U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical
protein T08H10.1 protein.
Length = 333
Score = 178 bits (433), Expect = 4e-45
Identities = 92/218 (42%), Positives = 135/218 (61%), Gaps = 7/218 (3%)
Frame = -2
Query: 695 VQYLDLYLIHWPQAYK-EDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
++Y+DLYLIH P +K ++GS P ++G++ +++ ++DTW+A+E L KEG +K++GVS
Sbjct: 104 LEYIDLYLIHCPFPFKHQEGSFAPLMENGELAVTEIAHIDTWRALEKLYKEGKLKALGVS 163
Query: 518 NFNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAK 339
NF+ QL+ L A VKP QVECH Y Q+ L+ C+ GV +TAY+PLGSP R A+
Sbjct: 164 NFSCNQLQALYDAAEVKPANQQVECHIYWPQQELRALCKKLGVTVTAYAPLGSPGRKAAR 223
Query: 338 PD------DPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDV 177
PD DP L +P +K +A + KT AQ+LIR+ G IPKSV+ RI N
Sbjct: 224 PDGVWPEGDPLL--EPIVKQLAAKYHKTAAQILIRHLTQHGISTIPKSVSPDRIVENIST 281
Query: 176 LDFKLSREDVALIDSFDCGGRLVPMTASLGHKHHPFEN 63
DFKLS ED+ ++S + RL ++ H P ++
Sbjct: 282 FDFKLSDEDMHTLNSIETRTRLFIADFAVKHPFFPHDD 319
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 162 bits (393), Expect = 3e-40
Identities = 77/214 (35%), Positives = 134/214 (62%), Gaps = 7/214 (3%)
Frame = -2
Query: 689 YLDLYLIHWPQAYKEDG-----SLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIG 525
Y+DL +IHWP + ED L+P +GK+++SDVDY++TWKA+E + G ++SIG
Sbjct: 106 YMDLIVIHWPFGWAEDEPPGERGLWPRGANGKMRYSDVDYLETWKALEDAHRSGKIRSIG 165
Query: 524 VSNFNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRP- 348
++NFN Q+E++ +KP V QVE +P+L+Q+ +++FC +G+ +TA+ G+P
Sbjct: 166 LANFNIGQVEQVWTKGLIKPAVLQVEMNPFLDQEEIRQFCREKGIILTAFMLTGNPGSAL 225
Query: 347 WAKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDF 168
+ K +DP L+ + L++IA GK+V QVL+R+ ID + KS RI N ++ F
Sbjct: 226 YRKHEDPNLLYNETLQSIAKGHGKSVVQVLVRWAIDLRTTALVKSSESKRIRQNINIFKF 285
Query: 167 KLSREDVALIDSFDCGGRLV-PMTASLGHKHHPF 69
+L+ +++A I + + R++ P+ + H + P+
Sbjct: 286 RLTSQEIARIKALNIDFRILNPLLGNYDHPYFPW 319
>U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical
protein C07D8.6 protein.
Length = 317
Score = 131 bits (316), Expect = 5e-31
Identities = 81/222 (36%), Positives = 120/222 (54%), Gaps = 10/222 (4%)
Frame = -2
Query: 695 VQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSN 516
++Y+DLYL H P A+ +D S I S V+ D W+ + + K GL K++GVSN
Sbjct: 105 LEYVDLYLAHMPAAFNDD-------MSEHIA-SPVE--DVWRQFDAVYKAGLAKAVGVSN 154
Query: 515 FNSKQLERLLQHATVKPVVN-QVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDR---- 351
+N+ Q+ R L + PV N QVE H Y Q +FC+ + +T+Y+ LGSP R
Sbjct: 155 WNNDQISRALALG-LTPVHNSQVELHLYFPQHDHVDFCKKHNISVTSYATLGSPGRVNFT 213
Query: 350 -PWAKPDD----PQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASN 186
P + D P ++D + A+A++ KT AQVL+RY +D G ++PKS+ +RI N
Sbjct: 214 LPTGQKLDWAPAPSDLQDQNVLALAEKTHKTPAQVLLRYALDRGCAILPKSIQENRIKEN 273
Query: 185 FDVLDFKLSREDVALIDSFDCGGRLVPMTASLGHKHHPFENE 60
F+V DF L+ ED+A ++ RL GH F E
Sbjct: 274 FEVFDFSLTEEDIAKLEESKNSQRLFLQDFMTGHPEDAFAAE 315
>Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical
protein ZC443.1 protein.
Length = 320
Score = 124 bits (299), Expect = 6e-29
Identities = 73/201 (36%), Positives = 108/201 (53%), Gaps = 11/201 (5%)
Frame = -2
Query: 695 VQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSN 516
+ Y+DLYL H P + K+DGS SDV D W+ E + GL K+IGVSN
Sbjct: 105 LDYVDLYLAHIPASTKDDGSFR----------SDVKVEDIWRGFEKVYGLGLTKAIGVSN 154
Query: 515 FNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSP------- 357
FN Q+ R++ V +Q+E H YL QK +E C+ + ITAY+ LGSP
Sbjct: 155 FNESQIVRIMNIQKVPIHASQLELHLYLPQKAHRELCKKHNILITAYATLGSPGRMSVVG 214
Query: 356 --DRPW--AKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIAS 189
RP + + M D +KA+A + KT AQ+L+R ++ G IVIPK+ R+
Sbjct: 215 SNGRPLFESTQNSENEMNDKHVKALAQKYSKTPAQILLRATVEMGIIVIPKTTNPERMKE 274
Query: 188 NFDVLDFKLSREDVALIDSFD 126
N ++ DF +S +V L+++ +
Sbjct: 275 NINIFDFNISNAEVNLLEAHE 295
>U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical
protein C35D10.6 protein.
Length = 287
Score = 109 bits (262), Expect = 2e-24
Identities = 62/183 (33%), Positives = 98/183 (53%)
Frame = -2
Query: 695 VQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSN 516
V+YLDL LIHWP GS ++ + V++W M ++ EG ++S+GVSN
Sbjct: 101 VEYLDLLLIHWP------GSSLKSENPANKKLR----VESWNVMCEMMAEGKLRSVGVSN 150
Query: 515 FNSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKP 336
F LE L + + V P VNQVE HP+ +Q L ++C + AYS LGSP + K
Sbjct: 151 FEICHLEELKKDSNVVPAVNQVEYHPHFHQDDLVKYCNENNIHFQAYSSLGSP--TYRK- 207
Query: 335 DDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSR 156
QL E+P +K +A + + +L+ + G V+P++ +A+NF V +++
Sbjct: 208 ---QLSEEPLIKELAQKYNVEIPVLLLGFAYCQGISVLPRTTNPEHVATNFKVTKLAITQ 264
Query: 155 EDV 147
ED+
Sbjct: 265 EDI 267
>U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical
protein ZK1290.5 protein.
Length = 321
Score = 108 bits (260), Expect = 3e-24
Identities = 66/194 (34%), Positives = 101/194 (52%)
Frame = -2
Query: 689 YLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFN 510
YLD+Y+IH PQ D + + K TW+ ME L ++ V+SIGVSN++
Sbjct: 99 YLDMYMIHMPQL--PDWIVNQKETKEK----------TWRQMELLYEDEHVRSIGVSNYS 146
Query: 509 SKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDD 330
+ L+ LL+ A++ P NQVE HP+ +Q LK +C+ G+ Y PL
Sbjct: 147 IEDLDELLEFASILPHANQVELHPWFHQADLKNYCDELGILTMGYCPLAK---------- 196
Query: 329 PQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSRED 150
+ +ED L IA + K+ AQ+ +R+ I +PKS R+ N +V DF+LS ED
Sbjct: 197 GKYLEDETLCKIASKYQKSPAQICLRWSIQQNVPTVPKSTDCRRLKENTNVFDFELSAED 256
Query: 149 VALIDSFDCGGRLV 108
+ ++SF R +
Sbjct: 257 MNTLNSFSSQNRKI 270
>Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical
protein F53F1.2 protein.
Length = 297
Score = 105 bits (253), Expect = 2e-23
Identities = 62/200 (31%), Positives = 103/200 (51%)
Frame = -2
Query: 689 YLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFN 510
Y+D+YL+H+P+ D D ++ + Y + +E G V+SIGVSN+
Sbjct: 113 YIDMYLVHYPKPNDSDN-----DDVNNAEYRKIAY----EVLEEAKAAGKVRSIGVSNYE 163
Query: 509 SKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDD 330
LE L +A V P NQ+E HP+ + L+++C+ + + A+S L +
Sbjct: 164 IVHLEELKTYAKVPPCANQLEYHPHFARIPLQKYCKEKNIFFQAFSSLAR--------HE 215
Query: 329 PQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSRED 150
P+L+EDP + +A + +V VL+ + + ++PKSVT SRI NF V+D L+ ED
Sbjct: 216 PKLIEDPVVVELAKKHNTSVPLVLLAWALRQNVGIVPKSVTPSRIVENFKVIDIALTPED 275
Query: 149 VALIDSFDCGGRLVPMTASL 90
+ + + D G + T L
Sbjct: 276 IQSLTALDRGQHYIRCTGWL 295
>U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical
protein C01G5.5 protein.
Length = 287
Score = 102 bits (245), Expect = 2e-22
Identities = 61/189 (32%), Positives = 101/189 (53%)
Frame = -2
Query: 692 QYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNF 513
+YLDL L+H+P+ P D + + + DTW A+E L EG ++SIGVSN+
Sbjct: 102 KYLDLVLVHYPR---------PLDTEDLNENNKMYRKDTWIALEKLHAEGKIRSIGVSNY 152
Query: 512 NSKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPD 333
+E + + T++P VNQ+E HP+ +K L+ +C + A+SPLG ++
Sbjct: 153 EPHHIEEMRSYITIEPQVNQIEYHPHFQRKVLRAYCNKNEILFQAFSPLGRGNK------ 206
Query: 332 DPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSRE 153
L+ D ++ IA TVA V++ + + V+ KSVT SR+A N+ L +LS +
Sbjct: 207 --TLLGDSTMERIALCHKTTVANVILAWIMKGKYGVVAKSVTPSRVAENYTSLSLELSDD 264
Query: 152 DVALIDSFD 126
+ I+ +
Sbjct: 265 EFEKINGLN 273
>Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical
protein K07C5.2 protein.
Length = 301
Score = 93.9 bits (223), Expect = 1e-19
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 1/191 (0%)
Frame = -2
Query: 689 YLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFN 510
Y+DL LIH+P+ ++ G+ D +I S V W+ +E + G V+SIGVSN+
Sbjct: 113 YVDLLLIHYPRD-RDTGN----DDDYEINKSRRKIV--WQTLEKAKESGRVRSIGVSNYE 165
Query: 509 SKQLERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDD 330
L + ++A ++PV+NQ E PYL + LK+FC+ + + +YS L W D
Sbjct: 166 VYHLVEMFEYAKIRPVLNQYEYQPYLTRPTLKKFCDLNNIVVQSYSSL-----CWG---D 217
Query: 329 PQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNF-DVLDFKLSRE 153
+++++ L + + +T +L + S +IPKS T SRI N + + KL+ +
Sbjct: 218 KEILQEKPLVDLCQKYNQTPQAILYAFAHCSNTSMIPKSATPSRIHDNLHNTIKIKLTED 277
Query: 152 DVALIDSFDCG 120
++ + S D G
Sbjct: 278 ELKSLRSLDKG 288
>Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical
protein F53F1.3 protein.
Length = 283
Score = 71.3 bits (167), Expect = 6e-13
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 1/201 (0%)
Frame = -2
Query: 689 YLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFN 510
Y+D+YLIH+P+++ + G P +++ +I TW + G ++S+GVS+F
Sbjct: 100 YIDMYLIHYPKSF-DYGDQDPMNKTLRIA--------TWNDLWECKNAGKIRSVGVSSFE 150
Query: 509 SKQLERLLQHA-TVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPD 333
+ LE L P NQVE HP+ ++ LK +C++ G+ A+S L
Sbjct: 151 IRHLEELKDLGKNFPPCCNQVEYHPHFTREELKNYCKSEGIFFQAFSSLAR--------H 202
Query: 332 DPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRSRIASNFDVLDFKLSRE 153
+ L+ + +A++ VL+ + +IPKS R+A N + L E
Sbjct: 203 NETLLSSEIITRLAEKYHVPKTTVLLSWATSQKVGIIPKSTNPERLAQNLKTV--LLEEE 260
Query: 152 DVALIDSFDCGGRLVPMTASL 90
+V I + + V T L
Sbjct: 261 EVKKICNLNLDKHYVRTTGWL 281
>U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical
protein C56G3.2 protein.
Length = 131
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = -2
Query: 698 NVQYLDLYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
+++Y+DLYL H P A+ +D S KI+ S V+ D W+ + + K GL K++GVS
Sbjct: 74 HLEYVDLYLAHMPTAFSDD-------MSQKIE-SSVE--DIWRQFDAVYKAGLAKAVGVS 123
Query: 518 NFNSKQL 498
N+N+ Q+
Sbjct: 124 NWNNDQI 130
>AC006627-8|AAK85458.1| 276|Caenorhabditis elegans Hypothetical
protein E01A2.1 protein.
Length = 276
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = -2
Query: 566 MEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKPVVNQV 450
ME LV+ + SIGVS+F+++QL+ ++ H VKP +N V
Sbjct: 149 MEKLVETSEIASIGVSDFSARQLKTIIDHFDVKPSINHV 187
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -2
Query: 377 YSPLGSPDRPWAKPDDPQLMEDPKLKAIADRLGKTVAQVLIRYQIDSGNIVIPKSVTRS 201
Y G R W P PQ+ DP+ + +RL + + + +Y+ I P + S
Sbjct: 46 YKQCGPSGRVWIVPCAPQMTFDPEDRVCKERLDSRIVKPMRKYETSRTIITTPAPIPSS 104
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 96 SCHGHQPTAAVERVDEGDVLPG-ELEVEHVK 185
SC GHQ VER + D++ G E++ E +K
Sbjct: 69 SCFGHQAYLIVERFNRNDIIVGVEIKFEEIK 99
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 628 RPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTST 509
RP + +S SR+ TP R W+R+ R S+A S T T
Sbjct: 358 RPVRRSRSRSRSR---TPNRNWTRARSRTRSQAKSSSTLT 394
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = -3
Query: 676 T*YTGPRPTRKTALSSRPTNQVKSSSRTSITWTPGRLWSRSSKRVWSRASESPTSTRSSW 497
T + G RP + S+ + +V+ R S TW+ R SRS R R+ E S R S
Sbjct: 42 TDFVGKRPKKHHRHKSKKSKKVR---RRSKTWSSSRSRSRSRSRSRGRSQERRRS-RKSR 97
Query: 496 RGCCSTRLSSR 464
+ +RL R
Sbjct: 98 KSRSRSRLKHR 108
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 661 PRPTRKTALSSRPTNQVKSSSRTSITWTPG 572
P TRK S P+ ++S SR S T TPG
Sbjct: 475 PPVTRKVRKSMMPSESIRSVSRNSSTSTPG 504
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
DGS PTD SG + D + + T PL K+GL S S
Sbjct: 5915 DGSPLPTDDSGAVIGPDGEVIPTDSNGIPLNKDGLPLSTDAS 5956
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGL 540
DGS PTD SG + D + + T + PL K GL
Sbjct: 3736 DGSPLPTDDSGAVIGPDGEVIPTDASGVPLSKLGL 3770
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEG 543
DG+ PTD SG I D + T +PL KEG
Sbjct: 2478 DGTPLPTDASGAIVGPDGQPIPTDSNGKPLSKEG 2511
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLV 537
DG+ PTD SG D + T + EPL K+G +
Sbjct: 3024 DGTALPTDASGAAIGPDGTPISTDETGEPLDKDGSI 3059
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 680 LYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEG 543
+Y +H P DG+ PTD SG I D + + T + PL K+G
Sbjct: 4249 VYPVHGP-----DGTPLPTDDSGAIIGPDGEVIPTDENGIPLSKDG 4289
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 650 KEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
K DG+L PTD +G + D ++ + +PL +G V + S
Sbjct: 5035 KPDGTLLPTDSTGSFVTENGDRIEFNEEGKPLGPDGEVLATDAS 5078
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
DGS PTD SG + D + + T PL K+GL S S
Sbjct: 5960 DGSPLPTDDSGAVIGPDGEVIPTDSNGIPLNKDGLPLSTDAS 6001
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGL 540
DGS PTD SG + D + + T + PL K GL
Sbjct: 3781 DGSPLPTDDSGAVIGPDGEVIPTDASGVPLSKLGL 3815
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEG 543
DG+ PTD SG I D + T +PL KEG
Sbjct: 2541 DGTPLPTDASGAIVGPDGQPIPTDSNGKPLSKEG 2574
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLV 537
DG+ PTD SG D + T + EPL K+G +
Sbjct: 3069 DGTALPTDASGAAIGPDGTPISTDETGEPLDKDGSI 3104
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 680 LYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEG 543
+Y +H P DG+ PTD SG I D + + T + PL K+G
Sbjct: 4294 VYPVHGP-----DGTPLPTDDSGAIIGPDGEVIPTDENGIPLSKDG 4334
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 650 KEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
K DG+L PTD +G + D ++ + +PL +G V + S
Sbjct: 5080 KPDGTLLPTDSTGSFVTENGDRIEFNEEGKPLGPDGEVLATDAS 5123
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
DGS PTD SG + D + + T PL K+GL S S
Sbjct: 5960 DGSPLPTDDSGAVIGPDGEVIPTDSNGIPLNKDGLPLSTDAS 6001
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGL 540
DGS PTD SG + D + + T + PL K GL
Sbjct: 3781 DGSPLPTDDSGAVIGPDGEVIPTDASGVPLSKLGL 3815
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEG 543
DG+ PTD SG I D + T +PL KEG
Sbjct: 2541 DGTPLPTDASGAIVGPDGQPIPTDSNGKPLSKEG 2574
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLV 537
DG+ PTD SG D + T + EPL K+G +
Sbjct: 3069 DGTALPTDASGAAIGPDGTPISTDETGEPLDKDGSI 3104
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 680 LYLIHWPQAYKEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEG 543
+Y +H P DG+ PTD SG I D + + T + PL K+G
Sbjct: 4294 VYPVHGP-----DGTPLPTDDSGAIIGPDGEVIPTDENGIPLSKDG 4334
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 650 KEDGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVS 519
K DG+L PTD +G + D ++ + +PL +G V + S
Sbjct: 5080 KPDGTLLPTDSTGSFVTENGDRIEFNEEGKPLGPDGEVLATDAS 5123
>AL032644-4|CAA21665.1| 490|Caenorhabditis elegans Hypothetical
protein Y51H1A.4 protein.
Length = 490
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 555 RQRGSGQEHRSLQLQLEAAGEVAAARDCQAGRQSGGMSSLPQPE 424
RQR G +LQ ++ AA AAA+ A S S LP+ E
Sbjct: 352 RQRNHGNSIIALQERMSAANLAAAAQHAHAPTSSSPQSPLPEIE 395
>Z71266-4|CAA95843.1| 478|Caenorhabditis elegans Hypothetical
protein R06C7.5a protein.
Length = 478
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -2
Query: 644 DGSLFPTDQSGKIQFSDVDYVDTWKAMEPLVKEGLVKSIGVSNFNSKQLERLLQHATVKP 465
+G TD KI ++ ++ KAM L +EG+ + + LE AT K
Sbjct: 356 EGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAKQLQATQKV 415
Query: 464 VVNQVECHPYLNQKR 420
+ Q P+ + R
Sbjct: 416 DIRQTMADPFFDSVR 430
>Z75711-11|CAB00038.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = -2
Query: 497 ERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLM 318
+ +L+ A +K NQ L ++ + C+AR + + G W++ +D +L+
Sbjct: 16 DEILKAAIMKYGKNQWSRIASLLHRKSAKQCKARWFE---WLDPGIKKTEWSREEDEKLL 72
Query: 317 EDPKL-----KAIADRLGKTVAQVLIRYQ 246
KL + IA +G+T AQ L RY+
Sbjct: 73 HLAKLMPTQWRTIAPIVGRTSAQCLERYE 101
>Z75710-10|CAB00029.1| 755|Caenorhabditis elegans Hypothetical
protein D1081.8 protein.
Length = 755
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = -2
Query: 497 ERLLQHATVKPVVNQVECHPYLNQKRLKEFCEARGVKITAYSPLGSPDRPWAKPDDPQLM 318
+ +L+ A +K NQ L ++ + C+AR + + G W++ +D +L+
Sbjct: 16 DEILKAAIMKYGKNQWSRIASLLHRKSAKQCKARWFE---WLDPGIKKTEWSREEDEKLL 72
Query: 317 EDPKL-----KAIADRLGKTVAQVLIRYQ 246
KL + IA +G+T AQ L RY+
Sbjct: 73 HLAKLMPTQWRTIAPIVGRTSAQCLERYE 101
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 452 VECHPYLNQKRLKEFCEARGVKI 384
+ C P++NQ +L +CEA G+ +
Sbjct: 2348 ITCVPHVNQGKLSVYCEADGMTL 2370
>AL132948-39|CAI79178.1| 380|Caenorhabditis elegans Hypothetical
protein Y39B6A.12b protein.
Length = 380
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 195 DPTPRHGLRDHDVPAVDLVSD-EDLGDSLPESVSDGLQ 305
D PR GL DHD P LV D + DS ++V LQ
Sbjct: 147 DSAPRGGLPDHDSPQHMLVVDPQSRADSEIDAVIRNLQ 184
>AL132948-38|CAD31811.1| 378|Caenorhabditis elegans Hypothetical
protein Y39B6A.12a protein.
Length = 378
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 195 DPTPRHGLRDHDVPAVDLVSD-EDLGDSLPESVSDGLQ 305
D PR GL DHD P LV D + DS ++V LQ
Sbjct: 147 DSAPRGGLPDHDSPQHMLVVDPQSRADSEIDAVIRNLQ 184
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +3
Query: 111 QPTAAVERVDEGDVLPGELEVEHVKVARDPTPRHGLRDHDVPAVDLVSDEDLGDSLPESV 290
+P A VE + D E EVE + +D TPR R A + S E G+ E V
Sbjct: 456 KPAAKVESEEPSDNEEEEEEVEESPIKKDKTPRKYSRK---SAAKVESTESSGNEEEEEV 512
Query: 291 SD 296
+
Sbjct: 513 EE 514
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,999,710
Number of Sequences: 27780
Number of extensions: 314219
Number of successful extensions: 1686
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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