Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b18
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    31   0.24 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.72 
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    29   0.96 
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.7  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    27   2.2  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   2.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   5.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.1  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   6.7  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   6.7  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   6.7  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   6.7  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   6.7  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    25   8.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   8.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  

>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 684 TTINLTQVEGGVMVNVLPEVLSATFDVRIAPDVD 583
           +TIN+  +EGG   N+L     A   +R+A D++
Sbjct: 272 STINIGTIEGGAAANILAAEAKAEVFIRVAEDIE 305


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = +2

Query: 470 LPSVFVLYTCGFFTRYSKVTPSPASLHQASIIFPNSSRSTSGAILTSNVALSTSGKTLTI 649
           LPS  V  T          T S  S +  SI+ P S+   S    T+ V  +TS  T T 
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNS---TTTTVPPTTSMNTTTT 95

Query: 650 TPPST*VKLIVVTSP 694
            PP+T +     T+P
Sbjct: 96  VPPTTSLNTTTTTAP 110


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -2

Query: 684 TTINLTQVEGGVMVNVLPEVLSATFDVRIAPDVDL----DEFGNMIEAWCKEAGEGVT 523
           T+I +  + GGV VN LPE  +   + R+     L    D +G ++E +  E    VT
Sbjct: 411 TSIAVDVINGGVKVNALPEETTLAVNHRVDASKGLKQVYDRYGGLLEEFGHEYHVNVT 468


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 515 YSKVTPSPASLHQASIIFPNSSRSTSGAILTSNVALSTSGKTLTITPPST*VKLIVVTSP 694
           ++ +T     +H     F  S+ +T+G IL  N +      T  +      V+   V+SP
Sbjct: 139 HTDLTADLLCVHANDFDFDTSTNTTNGRILARNASSLLMNSTDKVREFRRIVQTDAVSSP 198

Query: 695 MNVL-IGGSVLRF 730
           +NV+ IG S   F
Sbjct: 199 LNVVYIGDSPTDF 211


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 391 HRCPFRSTTQHPGNQFHTDTEHSAVCPRAQ 302
           H  P +++ +HP   FH     S+  PR Q
Sbjct: 220 HNTPLQTSQEHPKPSFHPSQFESSFSPRVQ 249


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = -2

Query: 366 HNIPVINFTPILNTPLYVHAHNERVHADMYKKGIDIMEKVLEALANV*AFTRSPTVLSIL 187
           HN+ V    PI+ +  Y    N+    +  KK  D +E  ++   +   + RS  V+ I 
Sbjct: 626 HNLSVKKIRPIIRSTEYGSPKNDFEQLEKDKKSFDQVEISVKEKGS--TYERSKVVILIY 683

Query: 186 SGINK*NMLVDLLIQNSNKE*SI 118
            G     + ++LL++   +E SI
Sbjct: 684 LGTENDLIALELLLKFLYEETSI 706


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
 Frame = +2

Query: 14  KIKHTQLKVL---STTSFFFQEINQRRKRLF--LRKPIKKIDYSLFEFWINKSTNIFHLL 178
           K KHT+  +L   + ++ +  +I Q+R  +   L   I++ +Y + + WI  S+N+F ++
Sbjct: 305 KNKHTKPHLLVMDALSNLYVWKILQKRSEISVSLLFTIRRANYGICD-WIPNSSNMFSMI 363

Query: 179 IPDSI 193
           + +S+
Sbjct: 364 VKNSL 368


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 518 SKVTPSPASLHQASIIFPNSSRSTSGAILTSNVALSTSGKTLTITPPST 664
           S  + S +S   +S    +SSR +S +   + ++ ST   T+T+TP S+
Sbjct: 212 SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSS 260


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +2

Query: 434 SITSTRLFQNGTLPSVFVLYTCGFFTRYSKVTPSP--ASLHQASIIFPNSSRSTSGAILT 607
           S+T+   F +G   S  +  +   F   S  T     ++  +AS  F   + STS    T
Sbjct: 115 SMTAISTFTSGKEASYAIQASPSTFLPDSTTTSGSQVSNAVEASSTFVADTTSTSCNPAT 174

Query: 608 SNVALSTSGKTLTITPPST*VKLIVV-TSPMNVLIG--GSV 721
             + ++TSG T T  PP T + ++ V T+     +G  GSV
Sbjct: 175 VLI-VTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSV 214


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +2

Query: 455 FQNGTLPSVFVLYTCGFFTRYSKVTPSPASLHQASIIFPNSSRSTSGAILTSNVALSTSG 634
           ++NG    V V+       R +   P P S+HQ     P    S+S    T  VA+  +G
Sbjct: 18  YKNGVPQEVIVIEDSAS-PRLTPNLPPPFSVHQLQSFVPPQPPSSSSPSTTGTVAVPING 76


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 60  FFKKLIKGGNASFCGNPLKRSTILYLNFGLI 152
           FFK   K G  + CG+PL +S   Y   G++
Sbjct: 549 FFKVPHKDGPEARCGSPLSKSYQRYFEEGIL 579


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +3

Query: 36  KYSLQLVFFFKKLIKGGNASF--CGN-PLKRSTILYLNFGLIN 155
           ++ L L  F K L++ G+ +   CGN PLKR    Y++ G+IN
Sbjct: 26  EWPLLLKNFDKLLVRTGHYTPIPCGNNPLKRPIAEYVSSGVIN 68


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +2

Query: 383 ASVAPGHVTHFNFKPIFSITST-RLFQNGTLPSVFVLYTCGFFTRYSKVTPSPASLHQAS 559
           AS+    V  ++ K   +++S   L       +V+V YT       S V   P +   A 
Sbjct: 81  ASLLSSSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYT-------SSVACFPYATSDAP 133

Query: 560 IIFPNSSRSTSGAILTSNVALSTSGKTLTITPPST 664
              P    +TS +I  +  A  +S  T+T + PST
Sbjct: 134 NPIPRGDSATSTSIAPTYSASDSSATTITSSSPST 168


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 190 YRKHSRAPCKCLNIGQCF*DFLHDVNTFLVHVRMNPLVVRVDIQRSVQYRCEID 351
           Y+  S A    L+I + F  F + + T L ++ +N    R DIQ++V + C+ID
Sbjct: 173 YQNLSSALDTILHIKK-FSKFPNGLVTQLCNIFVNHSKAREDIQKAVNHICKID 225


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
 Frame = -2

Query: 612 FDVRIAPDVDLDEFGNMIEAWCKEAGEGV---TFEYLVKNPQVYSTKTDGSVPFWNSLVE 442
           F   I    +L   G +I  W  +   G+    F  ++    +   K  G V FW S V+
Sbjct: 133 FKYAIVYPTNLTAVGIVIHYWRPDLNVGIWVAVFLVVILAINLLHVKYFGEVEFWLSAVK 192

Query: 441 VIEKMGLKLKCV 406
           ++  + L + C+
Sbjct: 193 ILVLVTLIITCI 204


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 681 TINLTQVEGGVMVNVLPEVLSATFDVRIAPDVDLDEFGNMI 559
           T+ LT ++  +  N+L E      D+ I  D+ +D+F +++
Sbjct: 191 TVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDLV 231


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 345 FTPILNTPLYVHAHNERVHADMYKKGIDIMEKVLEAL 235
           F+ +L T  +   HN  +  ++++KG+ I+E+ L +L
Sbjct: 421 FSKLLTTHPFSVMHNGLLTRNIWEKGLSIIEEQLNSL 457


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 524 VTPS--PASLHQASIIFPNSSRSTSGAILTSNVALSTSGKTLTITPPS 661
           VTP+  P S    S   P +S S++G   +  ++ STS  T T  PP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPT 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,016
Number of Sequences: 5004
Number of extensions: 79059
Number of successful extensions: 262
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)