Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b18
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827... 84 1e-16
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 46 4e-05
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39... 31 1.0
02_02_0240 + 8196140-8198248,8198381-8198650 29 3.1
06_03_1286 - 29000688-29001526,29001982-29002075,29002480-290025... 29 5.3
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 28 7.1
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152... 28 7.1
02_02_0348 - 9233032-9233154,9233233-9233311,9233387-9233511,923... 28 7.1
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 28 9.3
>08_02_1223 -
25381462-25381575,25381822-25382061,25382570-25382707,
25383397-25383849,25384528-25385010
Length = 475
Score = 84.2 bits (199), Expect = 1e-16
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Frame = -2
Query: 693 GDVTTINLTQVEGGV------MVNVLPEVLSATFDVRIAPDVDLDEFGNMI-EAWCKEAG 535
GDV ++N ++ G ++N+ P D+R+ P V + + E W +
Sbjct: 294 GDVVSVNFAYLKAGTPTPTGFVMNLQPSEAEIGLDIRLPPSVHTEALEKRLAEEWAPSS- 352
Query: 534 EGVTFEYLVKNPQVYS------TKTDGSVPFWNSLVEVIEKMGLKL-KCVTCPGATDARF 376
+TFE+ K + + T D S +W E +++ G KL K P +TDAR+
Sbjct: 353 RNLTFEFKQKTSVLDNFGKPAVTPADSSNVWWALFEEAVKRAGGKLGKPEIFPASTDARY 412
Query: 375 VRLHNIPVINFTPILNTPLYVHAHNERVHADMYKKGIDIMEKVLEALANV 226
R+ IP F+P+ NTP+ +H HNE + D Y KGI I E ++ LA +
Sbjct: 413 FRVLGIPAFGFSPMTNTPILLHDHNEFLSKDEYLKGIGIYESIIRTLATL 462
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = -2
Query: 441 VIEKMGLKLKCVTCPGATDARFVRLHNIPVINFTPILNTPLYVHAHNERVHAD--MYKKG 268
+I G K TD+RF+R IP + F+P+ NTP+ +H +NE H ++ G
Sbjct: 342 IISAGGKLAKPEILSSTTDSRFIRQLGIPALGFSPMTNTPILLHDNNEVNHLGLLLFNLG 401
Query: 267 IDIMEKVLEAL 235
++M K+ + L
Sbjct: 402 YNVMLKLRDVL 412
>03_01_0047 +
391689-392738,392832-392999,393091-393195,393529-393611,
393899-394364
Length = 623
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +2
Query: 98 LRKPIKKIDYSLFEFWIN---KSTNIFHLLIPDSIESTVGLRVNA*TLASASKTFSMMSI 268
LRK + K+ +SL+E W N K N+ +++ TV V + T+ASA + SMMSI
Sbjct: 2 LRKFLMKL-FSLWE-WNNIFPKYRNMICVILNSMSWVTVSSTVVSLTIASAGQRSSMMSI 59
Query: 269 PFLYMSA*TLSLC 307
+Y+ A +L+ C
Sbjct: 60 A-IYLLATSLTAC 71
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 369 VERNGHRWLPDMSHISTSNPSFR*LRPDYSRMVHFHRFS 485
V RNG +L ++ ++NP F +RP +S F + +
Sbjct: 196 VARNGKSFLTSLAQRESTNPQFHFIRPTHSMFTFFTKLT 234
>06_03_1286 -
29000688-29001526,29001982-29002075,29002480-29002581,
29002638-29002710,29003747-29003804,29003859-29003904,
29003985-29004111,29004198-29004273,29004348-29004405,
29004490-29004588,29004679-29004807,29005333-29005454,
29005567-29005735,29005829-29005929,29006082-29006208,
29006284-29006373,29006516-29006602,29006703-29006963,
29007029-29007058
Length = 895
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 573 FGNMIEAWCKEAGEGVTFEYLVKNPQVYST 484
F MI+ WCKEA + + F + +N + S+
Sbjct: 177 FNPMIDEWCKEAPKELDFNHEAENTKAVSS 206
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 35 KVLSTTSFFFQEINQRRKRLFLRKPIKKIDYSLFEFWINKSTNIF-HLLIPDSIESTVGL 211
KVLS +FF+ + F R+ ++ ++S EF +F HL+ ++E+T+ +
Sbjct: 210 KVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEF-------VFAHLIF--AVEATIAV 260
Query: 212 RV 217
RV
Sbjct: 261 RV 262
>02_04_0532 +
23711530-23711755,23712984-23713093,23713204-23715298,
23716092-23716153,23716236-23716277,23716614-23716673,
23716873-23717010,23717333-23717374,23717452-23717574
Length = 965
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 EEKIKHTQLKVLSTTSFFFQ-EINQ--RRKRLFLRKPIKKIDYSLF 136
E IK+ Q + FFF+ E ++ R KRLF P +IDY F
Sbjct: 314 ERVIKYFQWRQKHDMEFFFEYETDEAGRLKRLFWSDPQSRIDYDAF 359
>02_02_0348 -
9233032-9233154,9233233-9233311,9233387-9233511,
9233597-9233734,9233802-9233993,9235269-9237209
Length = 865
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 8 EEKIKHTQLKVLSTTSFFFQ-EINQ--RRKRLFLRKPIKKIDYSLF 136
E IK+ Q + FFF+ E ++ R KRLF P +IDY F
Sbjct: 179 ERVIKYFQWRQKHDMEFFFEYETDEAGRLKRLFWSDPQSRIDYDAF 224
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 448 GRSYRKDGFEVEMCDMSGSHRCPFRSTTQHPGNQFHT-DTEHSAVCPRAQREGSCG 284
G Y GFE E+ ++ S +RS G+ HT T AV P A G G
Sbjct: 48 GARYYLAGFESEVGPLNTSGGAEYRSPRDRVGHGTHTASTAVGAVSPDASYVGGLG 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,707,908
Number of Sequences: 37544
Number of extensions: 494914
Number of successful extensions: 1313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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