Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b18
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41012-1|AAA82294.3| 397|Caenorhabditis elegans Hypothetical pr... 140 1e-33
Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical pr... 134 6e-32
Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical pr... 134 6e-32
U41012-2|AAV28364.1| 411|Caenorhabditis elegans Hypothetical pr... 131 5e-31
Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical pr... 122 3e-28
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.22
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 33 0.22
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.22
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 33 0.22
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 33 0.22
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 33 0.22
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 33 0.22
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 33 0.22
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 33 0.22
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 30 1.6
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 30 1.6
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 30 1.6
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 30 1.6
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 30 1.6
AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical ... 30 1.6
AY753200-1|AAV31408.1| 402|Caenorhabditis elegans UNC-89 protein. 30 2.1
Z68336-5|CAA92740.3| 442|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan... 29 3.6
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella... 29 3.6
Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical pr... 29 4.8
AF332208-1|AAK17979.1| 435|Caenorhabditis elegans nuclear recep... 29 4.8
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 28 6.3
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL032623-5|CAA21512.1| 533|Caenorhabditis elegans Hypothetical ... 28 6.3
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 8.3
AC006830-3|AAP13735.1| 348|Caenorhabditis elegans Serpentine re... 28 8.3
>U41012-1|AAA82294.3| 397|Caenorhabditis elegans Hypothetical
protein C06A6.4a protein.
Length = 397
Score = 140 bits (339), Expect = 1e-33
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Frame = -2
Query: 696 IGDVTTINLTQVEGGVMVNVLPEVLSATFDVRIAPDVDLDEFGNMIEAWCKEAGEGVTFE 517
+GDVTT N+T + GGV VNV+PE A D+R+ P DLD ++ W KEAGEGVT+E
Sbjct: 240 VGDVTTSNITIINGGVQVNVVPEKFEAYIDIRVTPLQDLDAVLARVDQWAKEAGEGVTYE 299
Query: 516 YL-VKNPQVYSTKTDGSVPFWNSLVEVIEKMGLKLKCVTCPGATDARFVRLHNIPVINFT 340
++ N ++ S T PFW ++ + ++K G K K GATD+RFVR I I F+
Sbjct: 300 FMQFSNFKLISPNTRED-PFWAAIDDALQKEGCKYKKEIFIGATDSRFVRAQGIRAIGFS 358
Query: 339 PILNTPLYVHAHNERVHADMYKKGIDIMEKVLEALANV 226
PI+NTP +H HNE ++ + +G++I E ++ LANV
Sbjct: 359 PIINTPSLLHDHNEFLNEKTFLRGVEIYETLINKLANV 396
>Z68214-4|CAA92447.1| 397|Caenorhabditis elegans Hypothetical
protein C10C5.4 protein.
Length = 397
Score = 134 bits (324), Expect = 6e-32
Identities = 62/179 (34%), Positives = 103/179 (57%)
Frame = -2
Query: 762 LSKFMSLRAEEKRKTLPPINTFIGDVTTINLTQVEGGVMVNVLPEVLSATFDVRIAPDVD 583
L+ + R E+K +GDVTT+N+ ++GGV NV+PE A D+R+ P+ D
Sbjct: 219 LASARAFRNEQKELLEKNPTWALGDVTTLNVNILKGGVQFNVIPEKFEAYVDIRLTPNQD 278
Query: 582 LDEFGNMIEAWCKEAGEGVTFEYLVKNPQVYSTKTDGSVPFWNSLVEVIEKMGLKLKCVT 403
E ++ W K+AGEGVT+E+ + + PFW + + +++ +
Sbjct: 279 FGEIRAKLDQWVKDAGEGVTYEFSQHSDYKPVSPHTRDDPFWAAFEDSLKQENCEFTTEV 338
Query: 402 CPGATDARFVRLHNIPVINFTPILNTPLYVHAHNERVHADMYKKGIDIMEKVLEALANV 226
C G+TD+RFVR +P INF+P++NTP+ HAHNE ++ ++ +G++I E ++ L NV
Sbjct: 339 CVGSTDSRFVRKAGVPAINFSPMINTPVRAHAHNEFLNEKVFLRGVEIFETLINNLGNV 397
>Z68214-3|CAA92445.1| 399|Caenorhabditis elegans Hypothetical
protein C10C5.3 protein.
Length = 399
Score = 134 bits (324), Expect = 6e-32
Identities = 65/179 (36%), Positives = 102/179 (56%)
Frame = -2
Query: 762 LSKFMSLRAEEKRKTLPPINTFIGDVTTINLTQVEGGVMVNVLPEVLSATFDVRIAPDVD 583
L+ R E+K + IGDVTT+N+ V GGV NV+PE A D+R+ P +D
Sbjct: 219 LASARKFRDEQKALLESNPDLTIGDVTTLNVNIVNGGVQFNVIPEKFEAFVDIRLTPSID 278
Query: 582 LDEFGNMIEAWCKEAGEGVTFEYLVKNPQVYSTKTDGSVPFWNSLVEVIEKMGLKLKCVT 403
+E N ++ W K+AGEGVT+E+ + T PFW + + +++ K
Sbjct: 279 FNEMRNKLDQWVKDAGEGVTYEFSKHSDLKLVTPHTRDDPFWVAFEDSLKQEKCKFTTEV 338
Query: 402 CPGATDARFVRLHNIPVINFTPILNTPLYVHAHNERVHADMYKKGIDIMEKVLEALANV 226
G+TD+R VR + INF+P++NTPL HAHNE ++ ++ +GI+I + ++ +ANV
Sbjct: 339 LIGSTDSRIVREAGVRAINFSPLINTPLLAHAHNEFLNEKVFLRGIEIYQTLINNVANV 397
>U41012-2|AAV28364.1| 411|Caenorhabditis elegans Hypothetical
protein C06A6.4b protein.
Length = 411
Score = 131 bits (317), Expect = 5e-31
Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 14/171 (8%)
Frame = -2
Query: 696 IGDVTTINLTQVEGGVMVNVLPEVLSATFDVRIAPDVDLDEFGNMIEAWCKEAGEGVTFE 517
+GDVTT N+T + GGV VNV+PE A D+R+ P DLD ++ W KEAGEGVT+E
Sbjct: 240 VGDVTTSNITIINGGVQVNVVPEKFEAYIDIRVTPLQDLDAVLARVDQWAKEAGEGVTYE 299
Query: 516 YLVK-NPQVYST---KTDGSV----------PFWNSLVEVIEKMGLKLKCVTCPGATDAR 379
++ NP ST +T + PFW ++ + ++K G K K GATD+R
Sbjct: 300 FMQSTNPADKSTIDFETFSNFKLISPNTREDPFWAAIDDALQKEGCKYKKEIFIGATDSR 359
Query: 378 FVRLHNIPVINFTPILNTPLYVHAHNERVHADMYKKGIDIMEKVLEALANV 226
FVR I I F+PI+NTP +H HNE ++ + +G++I E ++ LANV
Sbjct: 360 FVRAQGIRAIGFSPIINTPSLLHDHNEFLNEKTFLRGVEIYETLINKLANV 410
>Z68214-5|CAA92446.2| 397|Caenorhabditis elegans Hypothetical
protein C10C5.5 protein.
Length = 397
Score = 122 bits (294), Expect = 3e-28
Identities = 60/179 (33%), Positives = 97/179 (54%)
Frame = -2
Query: 762 LSKFMSLRAEEKRKTLPPINTFIGDVTTINLTQVEGGVMVNVLPEVLSATFDVRIAPDVD 583
L+ R E+K N +GDVTT+N+ V GGV NV+PE A D+R+ P D
Sbjct: 219 LASARKFRNEQKVVLESNPNLTLGDVTTLNVNIVNGGVQFNVIPEKFEAYVDMRLTPHED 278
Query: 582 LDEFGNMIEAWCKEAGEGVTFEYLVKNPQVYSTKTDGSVPFWNSLVEVIEKMGLKLKCVT 403
++ M++ W K AGEGVT+E+ + Q + FW + + + + K +
Sbjct: 279 FNKIREMLDQWAKNAGEGVTYEFSQYSDQKPISAHTRDNSFWAAFEDSLNQENCKFEKGI 338
Query: 402 CPGATDARFVRLHNIPVINFTPILNTPLYVHAHNERVHADMYKKGIDIMEKVLEALANV 226
+TD+RFVR + INF+P++NTP H HNE ++ ++ +G++I + ++ L NV
Sbjct: 339 MVASTDSRFVRYEGVNSINFSPMINTPFLPHDHNEYLNEKVFLRGLEIYQTIINNLGNV 397
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 527 TPSPASLHQASIIFPNSSRSTSGAILTS-NVALSTSGKTLTITPPST 664
T S Q S P SS STS AILTS ++ST+ T+T PST
Sbjct: 564 TTSGEMTSQGSTQTPGSSVSTSAAILTSTQQSVSTNSPGSTVTRPST 610
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 527 TPSPASLHQASIIFPNSSRSTSGAILTS-NVALSTSGKTLTITPPST 664
T S Q S P SS STS AILTS ++ST+ T+T PST
Sbjct: 771 TTSGEMTSQGSTQTPGSSVSTSAAILTSTQQSVSTNSPGSTVTRPST 817
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 527 TPSPASLHQASIIFPNSSRSTSGAILTS-NVALSTSGKTLTITPPST 664
T S Q S P SS STS AILTS ++ST+ T+T PST
Sbjct: 771 TTSGEMTSQGSTQTPGSSVSTSAAILTSTQQSVSTNSPGSTVTRPST 817
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 548 HQASIIFPNSSRSTSGAILTSN-VALSTSGKTLTITPPST*VKLIVVTSPMNVLI 709
+++S+I PN+ S + SN V S S LT+ PPST IVV P +V I
Sbjct: 2034 NKSSLIIPNAQDSGKITVEASNEVGSSESSAQLTVNPPST--TPIVVDGPKSVTI 2086
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 548 HQASIIFPNSSRSTSGAILTSN-VALSTSGKTLTITPPST*VKLIVVTSPMNVLI 709
+++S+I PN+ S + SN V S S LT+ PPST IVV P +V I
Sbjct: 1394 NKSSLIIPNAQDSGKITVEASNEVGSSESSAQLTVNPPST--TPIVVDGPKSVTI 1446
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 548 HQASIIFPNSSRSTSGAILTSN-VALSTSGKTLTITPPST*VKLIVVTSPMNVLI 709
+++S+I PN+ S + SN V S S LT+ PPST IVV P +V I
Sbjct: 2034 NKSSLIIPNAQDSGKITVEASNEVGSSESSAQLTVNPPST--TPIVVDGPKSVTI 2086
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 548 HQASIIFPNSSRSTSGAILTSN-VALSTSGKTLTITPPST*VKLIVVTSPMNVLI 709
+++S+I PN+ S + SN V S S LT+ PPST IVV P +V I
Sbjct: 2034 NKSSLIIPNAQDSGKITVEASNEVGSSESSAQLTVNPPST--TPIVVDGPKSVTI 2086
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 548 HQASIIFPNSSRSTSGAILTSN-VALSTSGKTLTITPPST*VKLIVVTSPMNVLI 709
+++S+I PN+ S + SN V S S LT+ PPST IVV P +V I
Sbjct: 1394 NKSSLIIPNAQDSGKITVEASNEVGSSESSAQLTVNPPST--TPIVVDGPKSVTI 1446
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 548 HQASIIFPNSSRSTSGAILTSN-VALSTSGKTLTITPPST*VKLIVVTSPMNVLI 709
+++S+I PN+ S + SN V S S LT+ PPST IVV P +V I
Sbjct: 2034 NKSSLIIPNAQDSGKITVEASNEVGSSESSAQLTVNPPST--TPIVVDGPKSVTI 2086
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 341 VKLITGMLCSRTKRASVAPGHVTHFNFKPIFSITSTRLF 457
V I G++ + R+SV +FNF PIFSI T L+
Sbjct: 275 VPWIQGVIGKTSMRSSVTSSSPIYFNFLPIFSIILTVLW 313
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 570 GNMIEAWCKEAGEGVTFEYLVKNPQVYS 487
G+ ++ +CK AGEGV+F++ N + S
Sbjct: 181 GDSVKLYCKAAGEGVSFKWFKDNEPISS 208
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform a
protein.
Length = 4488
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 570 GNMIEAWCKEAGEGVTFEYLVKNPQVYS 487
G+ ++ +CK AGEGV+F++ N + S
Sbjct: 419 GDSVKLYCKAAGEGVSFKWFKDNEPISS 446
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform d
protein.
Length = 4369
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 570 GNMIEAWCKEAGEGVTFEYLVKNPQVYS 487
G+ ++ +CK AGEGV+F++ N + S
Sbjct: 419 GDSVKLYCKAAGEGVSFKWFKDNEPISS 446
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform c
protein.
Length = 4447
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 570 GNMIEAWCKEAGEGVTFEYLVKNPQVYS 487
G+ ++ +CK AGEGV+F++ N + S
Sbjct: 419 GDSVKLYCKAAGEGVSFKWFKDNEPISS 446
>AC024741-1|AAK68394.3| 789|Caenorhabditis elegans Hypothetical
protein R05G9R.1 protein.
Length = 789
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 509 TRYSKVTPSPAS-LHQASIIFPNSSRSTSGAIL-TSNVALSTSGKTLTITPPST*VKLIV 682
T + TP P+S L +I +P + STS +S + S +T T+ P+T V++
Sbjct: 381 TEQTTETPPPSSTLPPPTITYPTTYLSTSSVRPPSSRLTFSPIRRTTTLEEPTTTVEMTT 440
Query: 683 VTSPM 697
T P+
Sbjct: 441 TTKPI 445
>AY753200-1|AAV31408.1| 402|Caenorhabditis elegans UNC-89 protein.
Length = 402
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 548 HQASIIFPNSSRSTSGAILTSN-VALSTSGKTLTITPPST 664
+++S+I PN+ S + SN V S S LT+ PPST
Sbjct: 360 NKSSLIIPNAQDSGKITVEASNEVGSSESSAQLTVNPPST 399
>Z68336-5|CAA92740.3| 442|Caenorhabditis elegans Hypothetical
protein F22B3.8 protein.
Length = 442
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = -2
Query: 735 EEKRKTLPPINTFIGDVTTINLTQV 661
++KR +P ++TF+GD+ ++LT++
Sbjct: 412 DKKRPDMPEVSTFLGDMLKVDLTKM 436
>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
abnormal protein1 protein.
Length = 1732
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 323 GVFSIGVKLITGMLCSRTKRASVAPGHV 406
GVFS+ L GML SR + VAP HV
Sbjct: 257 GVFSVDCCLRRGMLKSRFETTYVAPSHV 284
>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1737
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 323 GVFSIGVKLITGMLCSRTKRASVAPGHV 406
GVFS+ L GML SR + VAP HV
Sbjct: 304 GVFSVDCCLRRGMLKSRFETTYVAPSHV 331
>Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical
protein T26H2.9 protein.
Length = 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 83 RKRLFLRKPIKKIDYSLFEFWINKSTNIFH 172
R+ L + +P+KK+D SL EF + K+ I+H
Sbjct: 350 RQWLHVCEPMKKLDMSLAEFSLFKALTIWH 379
>AF332208-1|AAK17979.1| 435|Caenorhabditis elegans nuclear receptor
NHR-79 protein.
Length = 435
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 83 RKRLFLRKPIKKIDYSLFEFWINKSTNIFH 172
R+ L + +P+KK+D SL EF + K+ I+H
Sbjct: 322 RQWLHVCEPMKKLDMSLAEFSLFKALTIWH 351
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 8 EEKIKHTQLKVLSTTSFFFQEINQRRKRLFLRKPIKKIDYSLFEFWIN 151
EE+ K + +L++ FFF+ + + L KP+ +S+F F ++
Sbjct: 592 EEESKGKKTNLLNSRIFFFRNFDDVCFQTILTKPLTTFHFSVFYFLVS 639
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 8 EEKIKHTQLKVLSTTSFFFQEINQRRKRLFLRKPIKKIDYSLFEFWIN 151
EE+ K + +L++ FFF+ + + L KP+ +S+F F ++
Sbjct: 592 EEESKGKKTNLLNSRIFFFRNFDDVCFQTILTKPLTTFHFSVFYFLVS 639
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 8 EEKIKHTQLKVLSTTSFFFQEINQRRKRLFLRKPIKKIDYSLFEFWIN 151
EE+ K + +L++ FFF+ + + L KP+ +S+F F ++
Sbjct: 592 EEESKGKKTNLLNSRIFFFRNFDDVCFQTILTKPLTTFHFSVFYFLVS 639
>AL032623-5|CAA21512.1| 533|Caenorhabditis elegans Hypothetical
protein Y43F8B.4 protein.
Length = 533
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = -2
Query: 495 VYSTKTDGSV-PFWNSLVEVIEKMGLKL-KCVTCPGATDARFV--RLHNIPVINFTPILN 328
+YST + PF + +E +K+ K K + + D R V RLH +I IL+
Sbjct: 9 IYSTYIFNFLTPFTDETLEFNDKIWDKCGKELRGDSSRDGRLVCYRLHKHLLIRKVEILS 68
Query: 327 TPLYVHAHNERVHADMYKKGIDIMEKVLEALANV*AFTRSP 205
+ ++ ++ +VH + K+ + E + + FT +P
Sbjct: 69 SEPFILQYHNQVHRRLAKRAVQEAEALRLEQLKISGFTTTP 109
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 518 SKVTPSPASLHQASIIFPNSSRSTSGAILTSNVALSTSGK---TLTITPPST 664
S VT SP++ S + +SS ST+ TS + STS T + T PST
Sbjct: 447 STVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPST 498
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 518 SKVTPSPASLHQASIIFPNSSRSTSGAILTSNVALSTSGK---TLTITPPST 664
S VT SP++ S + +SS ST+ TS + STS T + T PST
Sbjct: 447 STVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPST 498
>AC006830-3|AAP13735.1| 348|Caenorhabditis elegans Serpentine
receptor, class w protein3 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 193 RKHSRA-PCKCLNIGQCF*DFLHDVNTFLV 279
RKH R+ CL G C D L +NTFL+
Sbjct: 42 RKHMRSNSIYCLMCGICACDLLTQINTFLI 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,887,912
Number of Sequences: 27780
Number of extensions: 444116
Number of successful extensions: 1354
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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