Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b15
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    81   2e-16
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.77 
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   4.1  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    27   4.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   9.5  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVWSTFFI 624
           +N+SGRLLVGLRW N    +G+S W+FE+      RN  + + FW  L L P +W    I
Sbjct: 94  KNVSGRLLVGLRWRNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIWIILGI 153

Query: 623 FCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAK 516
             +   +F W+ LV +A+ LT  N   Y +C   AK
Sbjct: 154 VAIIRFEFLWLALVAVAIGLTSVNTAAYSRCDKDAK 189


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 527 FGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNTGV 405
           F + +S KSA+  F +  I  N   FMF   T  ++ NT +
Sbjct: 334 FSSLQSAKSASVSFSRSYIDWNPEGFMFHSKTKKSSFNTSL 374


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 63  KYLQNINEIPVKKDNLENEYNC 128
           ++  N+N+  +KK +LE +Y+C
Sbjct: 236 EFYNNLNQFQIKKLSLERQYDC 257


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 474 DIPKRTCLYVLATHAAQRWQHWCRLNKI 391
           D+P+ TCL  +++H   R Q   RL +I
Sbjct: 625 DLPEATCLIQISSHYGSRRQEAQRLGRI 652


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 571 KAINTRSIHLNLSPKRQNIKKVDQTKGHSVRPIQN 675
           K  N  S+ LN +PK   I  +D       +P+ N
Sbjct: 264 KEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSN 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,259
Number of Sequences: 5004
Number of extensions: 53649
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)