Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b15
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0432 + 3428920-3428934,3429007-3429111,3429341-3429397,342... 92 5e-19
01_03_0129 + 12831947-12832048,12832358-12832414,12832514-128327... 91 9e-19
01_06_0409 + 29142409-29142870 31 1.4
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 29 3.3
01_03_0201 + 13758227-13758760,13758784-13759452 29 3.3
12_01_1095 + 11436012-11436053,11436322-11436595,11470730-114707... 29 4.3
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 29 4.3
11_06_0008 - 19181933-19182009,19185148-19185691 29 5.7
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 29 5.7
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 29 5.7
10_01_0334 - 3680612-3681266,3682253-3682374 28 7.6
01_01_0522 - 3834551-3835451,3835992-3836572 28 7.6
07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468... 28 10.0
>05_01_0432 +
3428920-3428934,3429007-3429111,3429341-3429397,
3429499-3429702,3429790-3429849,3430797-3430923,
3431420-3431520
Length = 222
Score = 91.9 bits (218), Expect = 5e-19
Identities = 42/102 (41%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Frame = -1
Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTF 630
+N+SGR+LVG+RWWN +DD G S W FE +R+N+ +S LFW L L W
Sbjct: 95 KNVSGRILVGMRWWNEIDDEGNSVWKFECLDGEALARMNKKDSWLFWWTLYLTAAAWIIL 154
Query: 629 FIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLK 504
IF L L+ ++L+V + LTL+ AN+ G+ +C AK++++
Sbjct: 155 GIFSLIRLEADYLLVVGVCLTLSLANIVGFTRCNKDAKKNIR 196
>01_03_0129 +
12831947-12832048,12832358-12832414,12832514-12832717,
12832799-12832858,12835026-12835152,12835801-12835889
Length = 212
Score = 91.1 bits (216), Expect = 9e-19
Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 4/105 (3%)
Frame = -1
Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQ----SRVNRNESRLFWMGLTLCPLVWSTF 630
+N+SGR+LVGLRWWN +DD G S W FE +R+N+ +S LFW L L W
Sbjct: 89 KNVSGRILVGLRWWNEIDDEGNSVWKFECLDGESLARMNKKDSWLFWWTLYLTAAAWIVL 148
Query: 629 FIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSAT 495
IF L L ++L+V + L+L+ AN+ G+ KC AK+++ T
Sbjct: 149 GIFSLIRLHADYLLVVGVCLSLSIANIVGFTKCNKDAKKNVADWT 193
>01_06_0409 + 29142409-29142870
Length = 153
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 629 RKWTRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSST 760
R+W+RP A G R R C GS G R P+AT H +T
Sbjct: 44 RRWSRPDLDAGGSGRR--RRQCGDGSGGGRGPAATWWLPCHLAT 85
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 605 KFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQ 477
+F W + +L+A + G + GY+ K+ + + S M Q
Sbjct: 296 RFGWFITILVASCVAGVGIAGYVFYKYRLRSYMDSEIMAIMSQ 338
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = -1
Query: 716 EARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTLTGANLYGYI 537
+A ++ R+ SR +W+ T C W +F F LF L L L+A L + L G
Sbjct: 148 DAGGGKITRSSSRRWWLCPTGCYARWGSFMEFLLF-LGSTLGALALMAARL--SQLAGAA 204
Query: 536 KCKFGAKESLKSATTEFM 483
A E L+ AT M
Sbjct: 205 PGLAPASELLRRATLVVM 222
>12_01_1095 +
11436012-11436053,11436322-11436595,11470730-11470762,
11470770-11471494
Length = 357
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3
Query: 711 PSEPGQQEREPPVLDGPDAVPLGLVHFLYILPFRTQ 604
P EP QQ PP L +VPLG+V+ L + PFR++
Sbjct: 5 PPEPPQQ---PPQL----SVPLGIVNVLSLYPFRSE 33
>01_06_0371 + 28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/76 (28%), Positives = 29/76 (38%)
Frame = -1
Query: 752 YVDDNGKSHWVFEARQSRVNRNESRLFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIA 573
+ DD S AR S N RL L L V ST + + W L ++I
Sbjct: 799 WFDDPRNSSGALGARLSVDALNVRRLVGDNLALAVQVVSTLITGIVIAMIADWKLTLIIL 858
Query: 572 LTLTGANLYGYIKCKF 525
+ L GY + KF
Sbjct: 859 CVIPLVGLQGYAQVKF 874
>11_06_0008 - 19181933-19182009,19185148-19185691
Length = 206
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 639 PDQGAQRQAHPEQAALVPVDPALTGLEHPV 728
P+ G R +HP+ L+PV L GL PV
Sbjct: 113 PETGGHRVSHPQAPPLLPVLLELGGLRAPV 142
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -1
Query: 602 FKWMLLVLIALTLTGANLYGYIKCKFGAKESLKSATTEFMKQ 477
F W++ L+ L GA + GY+ K+ + + S M Q
Sbjct: 568 FGWLVTTLVLSCLAGAGVAGYVFYKYRLRRYMDSEVMAIMSQ 609
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 747 GRQRQVALGVRGPSEPGQQEREPPVLDG 664
G+QR + LG+ GP G PPVL+G
Sbjct: 245 GQQRMIDLGITGPE--GHALSRPPVLEG 270
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 629 RKWTRPRGTASGPS--RTGGSRSC*PGSDGPRTPSATCRC 742
R W PRG SG R GGSR G+ G +A C
Sbjct: 142 RSWRSPRGAGSGRGCYRRGGSREGRRGARGASAAAAVDGC 181
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 638 TRPRGTASGPSRTGGSRSC*PGSDGPRTPSATCRCRPHSS 757
T P S S G S S S G TP+++CR +PH +
Sbjct: 18 TAPDSRRSWISDIGSSSSVSARSFGGDTPASSCRYKPHKA 57
>07_03_1258 +
25244863-25245282,25246419-25246568,25246665-25246877,
25246979-25247068,25247311-25247424,25247881-25248150,
25248251-25248407,25248691-25248741,25248742-25248819,
25249357-25249457,25249832-25250002,25250136-25250210,
25251527-25251793
Length = 718
Score = 27.9 bits (59), Expect = 10.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 124 LYSFSKLSFLTGISFIFCKYLF 59
+YSF F+TGI+ ++C + F
Sbjct: 475 IYSFCSFHFITGITGLYCNHYF 496
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,782
Number of Sequences: 37544
Number of extensions: 332986
Number of successful extensions: 1039
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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