Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b15
         (803 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008430-1|AAH08430.1|  205|Homo sapiens family with sequence si...   134   5e-31
AF223467-1|AAF64142.1|  205|Homo sapiens NPD008 protein protein.      134   5e-31
AF151906-1|AAD34143.1|  181|Homo sapiens CGI-148 protein protein.     124   3e-28
BC011952-1|AAH11952.1|  276|Homo sapiens family with sequence si...    91   3e-18
AB074181-1|BAE45741.1|  164|Homo sapiens putative protein produc...    90   1e-17
BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processi...    31   3.7  
BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.      31   3.7  

>BC008430-1|AAH08430.1|  205|Homo sapiens family with sequence
           similarity 18, member B protein.
          Length = 205

 Score =  134 bits (323), Expect = 5e-31
 Identities = 58/119 (48%), Positives = 84/119 (70%), Gaps = 7/119 (5%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWS 636
           +N++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+GL  CP++W 
Sbjct: 80  KNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWV 139

Query: 635 TFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS-ATTEFMKQQIFQN 462
            F    LF  + KW+ +V++ + L GANLYGYI+CK  +++ L S AT+ F KQ + QN
Sbjct: 140 IFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQN 198


>AF223467-1|AAF64142.1|  205|Homo sapiens NPD008 protein protein.
          Length = 205

 Score =  134 bits (323), Expect = 5e-31
 Identities = 58/119 (48%), Positives = 84/119 (70%), Gaps = 7/119 (5%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWS 636
           +N++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+GL  CP++W 
Sbjct: 80  KNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWV 139

Query: 635 TFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS-ATTEFMKQQIFQN 462
            F    LF  + KW+ +V++ + L GANLYGYI+CK  +++ L S AT+ F KQ + QN
Sbjct: 140 IFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMATSYFGKQFLRQN 198


>AF151906-1|AAD34143.1|  181|Homo sapiens CGI-148 protein protein.
          Length = 181

 Score =  124 bits (300), Expect = 3e-28
 Identities = 50/100 (50%), Positives = 71/100 (71%), Gaps = 6/100 (6%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWS 636
           +N++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+GL  CP++W 
Sbjct: 80  KNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWV 139

Query: 635 TFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAK 516
            F    LF  + KW+ +V++ + L GANLYGYI+CK   K
Sbjct: 140 IFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRKK 179


>BC011952-1|AAH11952.1|  276|Homo sapiens family with sequence
           similarity 18, member B2 protein.
          Length = 276

 Score = 91.5 bits (217), Expect = 3e-18
 Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 6/75 (8%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWS 636
           +N++GRL+VGLRWWN++D++GKSHWVFE+R+     N      ESR+FW+GL  C ++W 
Sbjct: 80  KNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWV 139

Query: 635 TFFIFCLFGLKFKWM 591
            F    LF    KW+
Sbjct: 140 IFAFSALFSFTVKWL 154


>AB074181-1|BAE45741.1|  164|Homo sapiens putative protein product
           of Nbla10383 protein.
          Length = 164

 Score = 89.8 bits (213), Expect = 1e-17
 Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQSRVNRN------ESRLFWMGLTLCPLVWS 636
           +N++GRL+VGLRWWN++D++GK HWVFE+R+     N      ESR+FW+GL  C ++W 
Sbjct: 80  KNVTGRLMVGLRWWNHIDEDGKGHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWV 139

Query: 635 TFFIFCLFGLKFKWM 591
            F    LF    KW+
Sbjct: 140 IFAFSALFSFTVKWL 154


>BC067364-1|AAH67364.1|  871|Homo sapiens PRP40 pre-mRNA processing
           factor 40 homolog B (S. cerevisiae) protein.
          Length = 871

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 756 ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 637
           E  G+Q+Q       P  P  Q   PPV  GP  VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216


>BC050398-1|AAH50398.1|  788|Homo sapiens PRPF40B protein protein.
          Length = 788

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 756 ELCGRQRQVALGVRGPSEPGQQEREPPVLDGPDAVPLGLV 637
           E  G+Q+Q       P  P  Q   PPV  GP  VP GL+
Sbjct: 177 EAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLL 216


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,013,173
Number of Sequences: 237096
Number of extensions: 1922228
Number of successful extensions: 5603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5598
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)