Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b15
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical p...   106   2e-23
U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical p...   106   2e-23
AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical ...    28   9.0  

>U58755-12|ABJ99069.1|  205|Caenorhabditis elegans Hypothetical
           protein C34D4.4b protein.
          Length = 205

 Score =  106 bits (254), Expect = 2e-23
 Identities = 43/101 (42%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFI 624
           +NI+GRLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + P  W  F +
Sbjct: 77  KNITGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWIFFVV 136

Query: 623 FCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS 501
                LKF+WM++ L+   +  ANL+GY++C++   E + S
Sbjct: 137 TAFLTLKFEWMIVALLGALMNMANLWGYLRCRWNNTEQMTS 177


>U58755-11|AAB00701.1|  247|Caenorhabditis elegans Hypothetical
           protein C34D4.4a protein.
          Length = 247

 Score =  106 bits (254), Expect = 2e-23
 Identities = 43/101 (42%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
 Frame = -1

Query: 797 RNISGRLLVGLRWWNYVDDNGKSHWVFEARQ--SRVNRNESRLFWMGLTLCPLVWSTFFI 624
           +NI+GRLLVGLRWWN+VD +G +HW FE+ +  +R    + R+FW+GL + P  W  F +
Sbjct: 119 KNITGRLLVGLRWWNFVDADGNNHWKFESAKDMTRFATIDRRVFWLGLVVGPAAWIFFVV 178

Query: 623 FCLFGLKFKWMLLVLIALTLTGANLYGYIKCKFGAKESLKS 501
                LKF+WM++ L+   +  ANL+GY++C++   E + S
Sbjct: 179 TAFLTLKFEWMIVALLGALMNMANLWGYLRCRWNNTEQMTS 219


>AL032648-8|CAI46618.1|  365|Caenorhabditis elegans Hypothetical
           protein Y54G9A.10 protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 677 LFWMGLTLCPLVWSTFFIFCLFGLKFKWMLLVLIALTLTGANLYGYIKCKF 525
           +F +G +   + + T+ I     LKF W+LL +  L L    L+  IKC +
Sbjct: 2   IFIVGSSRQRICYPTYIIQNFELLKFPWLLLEISELFLFIITLFYSIKCSY 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,653,247
Number of Sequences: 27780
Number of extensions: 305112
Number of successful extensions: 1066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)