Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b11
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    39   7e-04
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   4.1  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   4.1  

>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
 Frame = -2

Query: 770 LLLXILGAMGAHRTFPETEAKDDLKKIFETANRFHFLHTLALVTV---PLCRRPYIAGAF 600
           LL   LGA G+H      +    L K + TA  +   H+LA + V   P+  +    G  
Sbjct: 12  LLSVGLGAYGSHGLQKRVQ-DPHLLKSWSTACTYLMFHSLATMAVSLHPVYGKSRWTGPL 70

Query: 599 FIAGMGMFCGTCY-YHAFTGDRKLRQV----TPLGGTCLILGWIAMV 474
            I G  +F GT Y          LR++    TP+GG  ++ GW  M+
Sbjct: 71  LITGSCLFSGTIYGLCLLPKGHSLRRILGPLTPIGGLVMLTGWATML 117


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 96  NARLFSVSVNPSNEKQANHHILIYIFVLLKTE 191
           N   FS+S++P+N +Q NH +  Y   L+  E
Sbjct: 587 NPNEFSMSMDPANMQQGNHALSDYHMQLMLLE 618


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 11  PVXQQXLKHPTXIHIQP 61
           PV Q  LKHP  IH QP
Sbjct: 668 PVDQFYLKHPILIHTQP 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,112
Number of Sequences: 5004
Number of extensions: 59486
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)