Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b11
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1148 + 30748787-30748835,30748930-30749000,30749261-307493...    46   4e-05
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634...    29   5.7  
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729...    28   7.5  

>03_05_1148 +
           30748787-30748835,30748930-30749000,30749261-30749322,
           30749470-30749569
          Length = 93

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = -2

Query: 608 GAFFIAGMGMFCGTCYYHAFTGDRKLRQVTPLGGTCLILGWIAMVF 471
           G    AG+ +F GTCY  A+  DRK     PLGG   I  W +++F
Sbjct: 48  GGLLTAGIVLFSGTCYTVAYLEDRKYSSTAPLGGFAFIAAWASLLF 93


>03_02_0197 +
           6337212-6337278,6339261-6340517,6340599-6340626,
           6340735-6340897
          Length = 504

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 617 YIAGAFFIAGMGMFCGTCYYHAFTGDRKLRQVTPLGGTCLILG 489
           Y   A++  GMGM  GTCY   F+G   +    P  G+C+  G
Sbjct: 412 YAFNAYY-HGMGMGSGTCY---FSGVAVITTTDPSHGSCVYAG 450


>02_05_0226 +
           26971851-26972034,26972734-26972834,26972876-26972978,
           26973335-26973477,26973525-26973605,26973929-26974015,
           26974097-26974239,26974746-26974896,26974973-26975095,
           26975362-26975445,26975531-26975718,26976726-26976900,
           26977008-26977129,26977231-26977310,26977532-26977590,
           26977921-26978075,26978680-26978858,26980050-26980162,
           26980243-26980413,26980552-26980680,26980756-26980856,
           26980942-26981059,26981739-26981818,26983230-26983302,
           26983865-26983950,26984025-26984076,26984221-26984352,
           26984560-26984628,26984912-26985004,26985806-26985901,
           26986710-26986808,26986894-26986986,26987459-26987608,
           26988391-26988549
          Length = 1323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 78  FTIIKNNARLFSVSVNPSNEKQANHHILIY 167
           + ++ NN R F++ VNP N     H+  +Y
Sbjct: 649 YIMVTNNGRTFNIVVNPVNISSGLHYYEVY 678


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,883
Number of Sequences: 37544
Number of extensions: 316932
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)