Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b11
         (801 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030270-1|AAH30270.1|  113|Homo sapiens chromosome 17 open read...    88   4e-17
AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    33   1.6  
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    32   2.8  

>BC030270-1|AAH30270.1|  113|Homo sapiens chromosome 17 open reading
           frame 61 protein.
          Length = 113

 Score = 87.8 bits (208), Expect = 4e-17
 Identities = 40/90 (44%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -2

Query: 743 GAHRT-FPETEAKDDLKKIFETANRFHFLHTLALVTVPLCRRPYIAGAFFIAGMGMFCGT 567
           GAH   FP+   K+    +F+ AN+ HFLH+LAL+ VP CR+P  AG    +G  +FC +
Sbjct: 26  GAHGAQFPDAYGKE----LFDKANKHHFLHSLALLGVPHCRKPLWAGLLLASGTTLFCTS 81

Query: 566 CYYHAFTGDRKLRQVTPLGGTCLILGWIAM 477
            YY A +GD  ++ + P GGT L+LGW+A+
Sbjct: 82  FYYQALSGDPSIQTLAPAGGTLLLLGWLAL 111


>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 355 IYCDILSFNLIHIRL*LYFYCLNYNVVKINTCIFICS 245
           IY  + ++  IHI    Y Y  +Y  + I+ C+FIC+
Sbjct: 73  IYTHMHTYMYIHIHAYAYIYVYSYTRICIHICVFICT 109


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 355 IYCDILSFNLIHIRL*LYFYCLNYNVVKINTCIFICS 245
           IY  + ++  IH+    Y Y  +Y  + I+ CIFIC+
Sbjct: 93  IYTHMHTYMYIHMHAYAYIYVYSYTRICIHICIFICT 129


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,004,689
Number of Sequences: 237096
Number of extensions: 2048151
Number of successful extensions: 2799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2798
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)