Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b10
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    27   1.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   2.7  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    25   4.7  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   6.1  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   6.1  
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    24   8.1  

>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 324 AKKGVVAFVKDFYYDPFKWSLVKSVGFFTVGVVIASECTG 205
           A  G+V  + D+ +   KWS +        G+V A+ C G
Sbjct: 280 AVAGLVWVIYDYIFRTRKWSTIGFCSGVVAGLVAATPCAG 319


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = -2

Query: 372 SSHSQQKQLPLFELIMAKKGVVAFVKDFYYDPFKWSLVKSVGF-FTVGVVIASECTGLEI 196
           + H    Q  L+E  +        + DFY  P  WS    +       V + SE +G  I
Sbjct: 135 NGHLSNMQGSLYETPLRILDAPGLLDDFYISPLAWSTNGELAVALAQNVYLWSEISGPSI 194

Query: 195 MPAMP 181
           M   P
Sbjct: 195 MELSP 199


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 378 IISSHSQQKQLPLFELIMAKKGVVAFVKDFYYDPFKWS 265
           +I +H     +P+ E++ A   ++   K FY+   +WS
Sbjct: 133 VIMAHRPDPSVPMEEVVRAFTQLIQDGKAFYWGTSEWS 170


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 69  QXXVVLVQPQHCSRKILKINIVTLF 143
           Q  V+L QP HCS    +   V +F
Sbjct: 388 QIIVILAQPLHCSGSCKRFAFVAVF 412


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 378 IISSHSQQKQLPLFELIMAKKGV-VAFVKDFYY-DPFKWSLVKSV 250
           ++     ++ +PL+ L+  ++ V V F  D  Y DP+ W L  S+
Sbjct: 424 LVDGGEDRENIPLWPLLHPQRFVDVVFAIDSTYNDPYGWPLGSSI 468


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 378 IISSHSQQKQLPLFELIMAKKGV-VAFVKDFYY-DPFKWSLVKSV 250
           ++     ++ +PL+ L+  ++ V V F  D  Y DP+ W L  S+
Sbjct: 424 LVDGGEDRENIPLWPLLHPQRFVDVVFAIDSTYNDPYGWPLGSSI 468


>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 330 IMAKKGVVAFVK-DFYYDPFKWSLVKSVGFFTVGVVIASEC 211
           IM K+GV+  V+ +    PF W + +  G+ T   ++  EC
Sbjct: 104 IMHKRGVICKVQYNGPGCPFIWEVEEMAGYATACELLTMEC 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,789
Number of Sequences: 5004
Number of extensions: 25590
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)