Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b10
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   0.78 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.2  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              20   9.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
 Frame = -2

Query: 354 KQLPLF----ELIMAKKGVVAFVKDFY 286
           K +P F    +LI+ KK    FVKD Y
Sbjct: 38  KPVPFFGTTKDLILVKKSTAHFVKDIY 64


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 54  DDQRCSLRWNGSYLY 10
           D+QRC L+W  S+ Y
Sbjct: 141 DEQRCVLKW-ASWTY 154


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 112 FREQCCG*TKTT 77
           +R++C G TKTT
Sbjct: 39  YRKKCIGETKTT 50


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 224 ITTPTVKNPTLF 259
           I +P + NPTLF
Sbjct: 23  IASPQLNNPTLF 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,736
Number of Sequences: 438
Number of extensions: 2082
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)