Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b09
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 56 6e-09
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 50 3e-07
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 43 4e-05
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo... 26 5.4
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 26 7.1
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 26 7.1
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.4
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 56.0 bits (129), Expect = 6e-09
Identities = 52/177 (29%), Positives = 75/177 (42%), Gaps = 6/177 (3%)
Frame = -2
Query: 592 APAGSPQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNIGPFAAAGFN--VSYSDNGLF 419
APA SP+ G KW N+ LAKA G + A YSD L
Sbjct: 256 APAASPELFVLSSIL---GGDAAVKWSHGNTLLAKAAGTASEYKATAVADLTPYSDASLL 312
Query: 418 GVVLSVPKDEXXXXXXXXXXXXKTSLSA----DAIKAGKNQLKTQVLNEADTGSSLAESL 251
VV+S + SLS+ D +K+G KT+ L+ + + ++
Sbjct: 313 SVVISGSCPKAIKATASESFKALKSLSSNIPNDVVKSGIAMAKTKYLSAFEPVT--LNAI 370
Query: 250 AAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 80
+A L + S S I+ D+++ IS+ VS+ S AVGNL +PY DEL
Sbjct: 371 SASSLVSASKGSDAFIS-GFDKVTPASISKVVSSLLAKPASTVAVGNLDVLPYYDEL 426
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 50.4 bits (115), Expect = 3e-07
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Frame = -2
Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN-SPLAK 488
+ G E+R ++ A++A+AV+G P +GN + + S
Sbjct: 247 FVGSEIRARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLS 306
Query: 487 AIGNIGPFAAA--GFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAIK 323
I A + F+ SYSD GL+G+ L ++ + + T + ++
Sbjct: 307 TIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDLVHFTLQNWARLTVATRAEVE 366
Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAA 143
K QL+ +L D+ +++AE + Q L TG S ++ I QI+ D+++ S
Sbjct: 367 RAKAQLRASLLLSLDSTTAIAEDIGRQLLTTGRRMSPQEVDLRIGQITEKDVARVASEMI 426
Query: 142 KNK-ISIGAVGNL 107
+K I++ AVG++
Sbjct: 427 WDKDIAVSAVGSI 439
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 43.2 bits (97), Expect = 4e-05
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 10/176 (5%)
Frame = -2
Query: 625 DLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN----SPLAKAIGNIGPFAA 458
+ HV +A++G P P LG G G S L + N P+
Sbjct: 285 EFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYLNVLNQYPWVE 344
Query: 457 A--GFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT---SLSADAIKAGKNQLKTQV 293
FN SY+D+GLFG+ +++ D S++++ + KNQLK+ +
Sbjct: 345 TCMAFNHSYTDSGLFGMFVTILDDAAHLAAPLIIRELCNTVLSVTSEETERAKNQLKSSL 404
Query: 292 LNEADTGSSLAESLAAQ-GLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKIS 128
L ++ E L Q G + ++ + ID ++ +D+S+ +S
Sbjct: 405 LMNLESRMISLEDLGRQIQTQNGLYITPKEMIEKIDALTPSDLSRVARRVLTGNVS 460
>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 643 LILHHNK*MLQPEKHLMRSILGFEQSMQPFPE 738
+IL H+K L P + L ++ FE+ +Q +PE
Sbjct: 458 IILSHDK--LDPIRGLRSKLISFERFLQKYPE 487
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 175 YWISGRYPWRCQQQSEQSRCISLALLMIRQATILCRLH-LTLVSSTDF 315
Y +S + W CQ S R +S A L ++ C +H ++ S +F
Sbjct: 304 YCLSQLFNWSCQNISSYQRLVSFAHL-YSYTSVKCLVHWFQIMRSAEF 350
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 19 C*FIKVGNRLRNKLRF 66
C IK+GN LRNK RF
Sbjct: 136 CDIIKIGNILRNKERF 151
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 505 NSPLAKAIGNIGPFAAAGFNVSY 437
++PL KAIGNI F+ ++Y
Sbjct: 27 DAPLKKAIGNIKKFSIGSLGLTY 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,676
Number of Sequences: 5004
Number of extensions: 46801
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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