Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b09
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0459 + 29538025-29538579,29539190-29539354,29539448-295395... 55 6e-08
01_01_0645 + 4890647-4890682,4891684-4891929,4892021-4892317,489... 50 2e-06
01_06_0648 - 30844289-30844341,30844536-30844648,30845435-308454... 44 1e-04
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 40 0.002
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 39 0.004
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 32 0.46
03_05_1146 - 30735010-30735216,30735336-30735650,30740169-307401... 31 1.4
01_07_0301 + 42607239-42607277,42607374-42607577,42607669-426079... 29 4.3
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 28 9.8
04_04_1202 - 31700414-31700854 28 9.8
01_06_1410 + 37116414-37116695,37116796-37116902,37117148-371176... 28 9.8
>01_06_0459 +
29538025-29538579,29539190-29539354,29539448-29539585,
29539685-29539836,29539949-29540057,29540281-29540379,
29541051-29541116,29541208-29541315,29541428-29541553
Length = 505
Score = 55.2 bits (127), Expect = 6e-08
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 9/204 (4%)
Frame = -2
Query: 679 QAEASTYYGGELRKEIGG-DLAHVALAVQGAPAGSPQXXXXXXXXXXLG--NGPVTKWGA 509
+A + + G E+R E L H A+A +G+ +P LG N +
Sbjct: 276 EANPAIFTGSEVRVEQPEMPLTHFAIAFKGSSWANPSSIPLMVIQSILGTWNRSIGVGNC 335
Query: 508 DNSPLAKAIGNIGPFAAA--GFNVSYSDNGLFGVVLSVPKD---EXXXXXXXXXXXXKTS 344
S LA+ I N G A + FN +Y D GLFG+ D +
Sbjct: 336 SGSALARGISN-GNLAESMIAFNTNYRDTGLFGICTIAQPDSLYDLSQLIMQEFRRLAFE 394
Query: 343 LSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDIS 164
+S + +NQLK+ +L D ++++E+ Q L G V +++ ID + + +
Sbjct: 395 VSETEVARARNQLKSALLLHIDGSTAVSENNGRQMLTYGRVMPFLELFARIDAVDRDTVM 454
Query: 163 QAVSNAAKNK-ISIGAVGNLAFVP 95
+ + +K I++ AVG L +P
Sbjct: 455 ETAKDFIIDKDIALAAVGPLTNLP 478
>01_01_0645 +
4890647-4890682,4891684-4891929,4892021-4892317,
4892407-4892574,4892674-4892841,4892924-4893004,
4893105-4893171,4893657-4893751,4894027-4894099,
4894177-4894247,4894325-4894374,4895263-4895375,
4895461-4895513
Length = 505
Score = 50.4 bits (115), Expect = 2e-06
Identities = 54/250 (21%), Positives = 90/250 (36%), Gaps = 14/250 (5%)
Frame = -2
Query: 787 ARNITPSRCAVTVIGDSQERAALIVQNL--KLTSSDASQAEASTYYGGELRKEIGGDLAH 614
A N T R + G + I + L + STY GGE R+
Sbjct: 249 AENYTAPRIVLAATGVDHDELVSIAEPLLSDMPGVTGPAKPKSTYVGGEYRRTADSSNTD 308
Query: 613 VALA--VQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNI-GPF----AAA 455
VALA V G + LG G WG L ++ ++ F + A
Sbjct: 309 VALAFEVPGGWLKEKEFVTVSVLQTLLGGGGTYSWGRHGKGLHSSLNHLANEFDQIRSIA 368
Query: 454 GFNVSYSDNGLFGVVLS-----VPKDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVL 290
F +S+ G+FG+ S VPK + + K K+ +L
Sbjct: 369 AFKDVHSNTGIFGIHTSTDAAFVPKAIDLATRELTSLATPGKVDQTQLDRAKATAKSAIL 428
Query: 289 NEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGN 110
++ +S E + Q L G + + K +D ++ DI+ + +++ + GN
Sbjct: 429 MNLESKASATEDMGRQILAFGERKPVEHLLKAVDGVTLKDITALAEKIISSPLTMASHGN 488
Query: 109 LAFVPYIDEL 80
+ VP D +
Sbjct: 489 VLNVPTYDSV 498
>01_06_0648 -
30844289-30844341,30844536-30844648,30845435-30845484,
30845572-30845642,30845725-30845797,30846744-30846841,
30846936-30847002,30847150-30847230,30847312-30847479,
30847563-30847730,30847813-30848109,30848205-30848426,
30849287-30849325
Length = 499
Score = 44.4 bits (100), Expect = 1e-04
Identities = 57/249 (22%), Positives = 92/249 (36%), Gaps = 18/249 (7%)
Frame = -2
Query: 787 ARNITPSRCAVTVIGDSQERAALIVQNL--KLTSSDASQAEASTYYGGELRKEIGGDLAH 614
A N T R + G + I + L L S + S Y GG+ R + D H
Sbjct: 242 AENYTAPRMVLAASGVEHDELVSIAEPLLSDLPSVKRPEEPKSVYVGGDYRCQADSDKTH 301
Query: 613 VALAVQGAPAG----SPQXXXXXXXXXXLGNGPVTKWGAD---NSPLAKAIGN----IGP 467
+ALA + P G G G + G +S L I N I
Sbjct: 302 IALAFE-VPGGWFEEKTAIIVTVLQMLMGGGGSFSAGGPGKGMHSRLYLRILNNYHQIES 360
Query: 466 FAAAGFNVSYSDNGLFGVVLSVP-----KDEXXXXXXXXXXXXKTSLSADAIKAGKNQLK 302
F+A FN Y+ +GLFG+ + K ++ + + K K
Sbjct: 361 FSA--FNSIYNHSGLFGIHATTSPNFASKAVDLAAGELLEVATPGKVTQEQLDRAKQATK 418
Query: 301 TQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIG 122
+ VL ++ +E + Q L G + KD++ I+ NDIS + +++
Sbjct: 419 SAVLMNLESRVVASEDIGRQILTYGERKPIEHFLKDLEAITLNDISSTAKKIISSPLTLA 478
Query: 121 AVGNLAFVP 95
+ G++ VP
Sbjct: 479 SWGDVIHVP 487
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 39.9 bits (89), Expect = 0.002
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 12/213 (5%)
Frame = -2
Query: 697 TSSDASQAEASTYYGGELRKEIGGD--LAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPV 524
T+S + + + G E+R I D LA A+A GA P LG+
Sbjct: 311 TTSMLVSTQPACFTGSEVRI-IDDDMPLAQFAVAFNGASWIDPDSIALMVMQSMLGSWNK 369
Query: 523 TKWGADN--SPLAK--AIGNIGPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXX 356
+ G + S L + AI +I A FN +Y D GLFG V +V K +
Sbjct: 370 SAGGGKHMGSELVQRVAINDIAESIMA-FNTNYKDTGLFG-VYAVAKPDCLDDLAFAIMQ 427
Query: 355 XKTSLS-----ADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDI 191
+ LS D I+A +NQLK+ + D +++ E + Q L G ++ I
Sbjct: 428 EISKLSYRVTEEDVIRA-RNQLKSSIQLHLDGSTAVVEDIGRQLLIYGRRIPIPELFARI 486
Query: 190 DQISNNDISQAVSNAAKNK-ISIGAVGNLAFVP 95
D + + + + + ++ I+I A+G + +P
Sbjct: 487 DAVDASTVKRVANRFIFDQDIAIAAMGPIQGLP 519
>05_06_0132 + 25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 39.1 bits (87), Expect = 0.004
Identities = 46/249 (18%), Positives = 91/249 (36%), Gaps = 16/249 (6%)
Frame = -2
Query: 787 ARNITPSRCAVTVIGDSQERAALIVQNL--KLTSSDASQAEASTYYGGELRKEIGGDLAH 614
+ N T R + G + + + L L S + S Y GG+ + H
Sbjct: 294 SENYTAPRMVLAASGIEHDELVSVAEPLLSDLPSVKRPEEPKSVYVGGDYHCQADSTSTH 353
Query: 613 VALAVQGAPAGSPQ----XXXXXXXXXXLGNGPVTKWGADNSP----LAKAIGNIGPFAA 458
+ALA + P G Q G G + G + + N G +
Sbjct: 354 IALAFE-VPGGWRQEKTAMIVTVLQVLMGGGGSFSTGGPGKGMHSWLYLRVLNNYGQIES 412
Query: 457 -AGFNVSYSDNGLFGVVLSVPKD-----EXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQ 296
+ F+ Y+++GLFG+ + D ++ + + K K+
Sbjct: 413 FSAFSSIYNNSGLFGIHATTNPDFVSSAVDLAARELHEVATPGKVTQEQLDRAKEATKSS 472
Query: 295 VLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAV 116
VL + ++ +E + Q L G + K +++I+ NDIS + +++ +
Sbjct: 473 VLMDLESRIVASEDIGRQVLTYGERKPIEYFLKTVEEITLNDISSTAKKIISSPLTLASW 532
Query: 115 GNLAFVPYI 89
G++A ++
Sbjct: 533 GDVACCVFV 541
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -2
Query: 346 SLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDI 167
++ D +K+ KN+ K + + D GSSL L + TGSV V A +SN +
Sbjct: 423 TVGEDGLKSSKNKTKRKYSDVVDDGSSLMNWLNGKKKRTGSVHHTV--AHPAGNLSNKKV 480
Query: 166 SQAVS 152
+ S
Sbjct: 481 TPTAS 485
>03_05_1146 -
30735010-30735216,30735336-30735650,30740169-30740191,
30740591-30740666,30740764-30740889,30740968-30741033,
30741296-30741539,30741639-30741691
Length = 369
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 761 CCYCNW*FSGKGCIDCSK-PKIDL-IRCFS 678
C YCN SGK I CSK P DL + CFS
Sbjct: 53 CNYCNKDISGKIRIKCSKCPDFDLCVECFS 82
>01_07_0301 +
42607239-42607277,42607374-42607577,42607669-42607965,
42608055-42608222,42608393-42608560,42608653-42608733,
42608844-42608910,42609326-42609423,42609665-42609737,
42609826-42609896,42610013-42610062,42610145-42610257,
42610341-42610384
Length = 490
Score = 29.1 bits (62), Expect = 4.3
Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 16/245 (6%)
Frame = -2
Query: 781 NITPSRCAVTVIGDSQERAALIVQNLKLTSSDASQAEA--STYYGGELRKEIGGDLAHVA 608
N T R V G + + + L S E S Y GG+ R ++ HVA
Sbjct: 238 NFTADRLVVAASGVDHQYLLDVAEPLLSDWHKGSPVERPESKYIGGDFRHRADSEMTHVA 297
Query: 607 LAVQGAPAG----SPQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNI--GPFAAAGFN 446
LA + P G G G + G ++ + F+
Sbjct: 298 LAFE-VPGGWLEERDATIMTVVQTLMGGGGSFSSGGPGKGMHSRLYLRVLTKYHTVESFS 356
Query: 445 V---SYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT-----SLSADAIKAGKNQLKTQVL 290
V ++ +GLFG+ L+ P D ++ + KN + VL
Sbjct: 357 VFSNAFDRSGLFGIYLTTPSDFVAKAVDIATKELIAIATPGQVTDIELARAKNSTISAVL 416
Query: 289 NEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGN 110
++ +AE + Q L G + + +D+++ +DI+ + ++ + G+
Sbjct: 417 MNLESRVIVAEDIGRQILTYGCRKPVDHFLQCMDEMTLDDITAFAKKMLSSPPTMASWGD 476
Query: 109 LAFVP 95
+ VP
Sbjct: 477 VDKVP 481
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 514 GADNSPLAKAIGNIGPFAAAGFNVSYSDNGLFGVVL 407
G + AKA+ P AG+ Y D+G+ G VL
Sbjct: 170 GTQDKRSAKAVQKSIPRPPAGYKYPYGDSGIIGYVL 205
>04_04_1202 - 31700414-31700854
Length = 146
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 766 RCAVTVIGDSQERAALI--VQNLKLTSSDASQAEASTYYG 653
RC V V+G S AA++ + L L ++ AS+A A + G
Sbjct: 106 RCVVVVVGSSAASAAIVHGEKRLHLAAAPASEAAACSEIG 145
>01_06_1410 +
37116414-37116695,37116796-37116902,37117148-37117649,
37118211-37118326,37119007-37119211
Length = 403
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 195 SLAMSTAERTEPVYKPCAANDSASDDPVSASFNTCVFN 308
SLA + ++ +P C+AN + SD + A C FN
Sbjct: 206 SLASNICDQLDPASPKCSANSTMSDLVLPARDIICAFN 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,334,956
Number of Sequences: 37544
Number of extensions: 358848
Number of successful extensions: 819
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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