Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b09
(794 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrom... 100 5e-21
BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c ... 100 5e-21
BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein. 100 5e-21
BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein. 45 3e-04
AL050216-1|CAB43319.1| 316|Homo sapiens hypothetical protein pr... 45 3e-04
BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein. 45 4e-04
L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c re... 38 0.042
D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein. 38 0.042
BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c ... 38 0.042
>J04973-1|AAA35710.1| 453|Homo sapiens protein ( Human cytochrome
bc-1 complex core protein II mRNA, complete cds. ).
Length = 453
Score = 100 bits (240), Expect = 5e-21
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Frame = -2
Query: 781 NITPSRCAVTVIGDSQERAALIVQN-LKLTSSDASQAEASTYYGGELRKEIGGDLAHVAL 605
+ T +R A+ +G S + + L + + Y GGE+R++ G L H A
Sbjct: 212 HFTSARMALIGLGVSHPVLKQVAEQFLNMRGGLGLSGAKANYRGGEIREQNGDSLVHAAF 271
Query: 604 AVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN-SPLAKAIGNIG--PFAAAGFNVSYS 434
+ A AGS + LG GP K G++ S L +A+ PF + FN SYS
Sbjct: 272 VAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYS 331
Query: 433 DNGLFGVVL----SVPKDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVLNEADTGSS 266
D+GLFG+ + D + +LS ++A KN+LK L ++
Sbjct: 332 DSGLFGIYTISQATAAGDVIKAAYNQVKRIAQGNLSNTDVQAAKNKLKAGYLMSVESSEC 391
Query: 265 LAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYID 86
E + +Q L GS + + ID ++N DI A + S+ A GNL P++D
Sbjct: 392 FLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQKSMAASGNLGHTPFVD 451
Query: 85 EL 80
EL
Sbjct: 452 EL 453
>BC003136-1|AAH03136.1| 453|Homo sapiens ubiquinol-cytochrome c
reductase core protein II protein.
Length = 453
Score = 100 bits (240), Expect = 5e-21
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Frame = -2
Query: 781 NITPSRCAVTVIGDSQERAALIVQN-LKLTSSDASQAEASTYYGGELRKEIGGDLAHVAL 605
+ T +R A+ +G S + + L + + Y GGE+R++ G L H A
Sbjct: 212 HFTSARMALIGLGVSHPVLKQVAEQFLNMRGGLGLSGAKANYRGGEIREQNGDSLVHAAF 271
Query: 604 AVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN-SPLAKAIGNIG--PFAAAGFNVSYS 434
+ A AGS + LG GP K G++ S L +A+ PF + FN SYS
Sbjct: 272 VAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYS 331
Query: 433 DNGLFGVVL----SVPKDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVLNEADTGSS 266
D+GLFG+ + D + +LS ++A KN+LK L ++
Sbjct: 332 DSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEC 391
Query: 265 LAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYID 86
E + +Q L GS + + ID ++N DI A + S+ A GNL P++D
Sbjct: 392 FLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQKSMAASGNLGHTPFVD 451
Query: 85 EL 80
EL
Sbjct: 452 EL 453
>BC000484-1|AAH00484.1| 453|Homo sapiens UQCRC2 protein protein.
Length = 453
Score = 100 bits (240), Expect = 5e-21
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Frame = -2
Query: 781 NITPSRCAVTVIGDSQERAALIVQN-LKLTSSDASQAEASTYYGGELRKEIGGDLAHVAL 605
+ T +R A+ +G S + + L + + Y GGE+R++ G L H A
Sbjct: 212 HFTSARMALIGLGVSHPVLKQVAEQFLNMRGGLGLSGAKANYRGGEIREQNGDSLVHAAF 271
Query: 604 AVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN-SPLAKAIGNIG--PFAAAGFNVSYS 434
+ A AGS + LG GP K G++ S L +A+ PF + FN SYS
Sbjct: 272 VAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNTTSHLHQAVAKATQQPFDVSAFNASYS 331
Query: 433 DNGLFGVVL----SVPKDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVLNEADTGSS 266
D+GLFG+ + D + +LS ++A KN+LK L ++
Sbjct: 332 DSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLSNTDVQAAKNKLKAGYLMSVESSEC 391
Query: 265 LAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYID 86
E + +Q L GS + + ID ++N DI A + S+ A GNL P++D
Sbjct: 392 FLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINAAKKFVSGQKSMAASGNLGHTPFVD 451
Query: 85 EL 80
EL
Sbjct: 452 EL 453
>BC014079-1|AAH14079.2| 480|Homo sapiens PMPCB protein protein.
Length = 480
Score = 45.2 bits (102), Expect = 3e-04
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 9/198 (4%)
Frame = -2
Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 491
+ G E+R ++ LAH+A+AV+ P +GN + G N S LA
Sbjct: 270 FTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLA 329
Query: 490 KAI--GNIGPFAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAI 326
+ GN+ + FN SY+D GL+G+ + S + TS++ +
Sbjct: 330 QLTCHGNLC-HSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 388
Query: 325 KAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNA 146
+N LKT +L + D + + E + Q L ++ ID ++ I + +
Sbjct: 389 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKY 448
Query: 145 AKNKI-SIGAVGNLAFVP 95
N+ +I AVG + +P
Sbjct: 449 IYNRSPAIAAVGPIKQLP 466
>AL050216-1|CAB43319.1| 316|Homo sapiens hypothetical protein
protein.
Length = 316
Score = 45.2 bits (102), Expect = 3e-04
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 9/198 (4%)
Frame = -2
Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 491
+ G E+R ++ LAH+A+AV+ P +GN + G N S LA
Sbjct: 106 FTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLA 165
Query: 490 KAI--GNIGPFAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAI 326
+ GN+ + FN SY+D GL+G+ + S + TS++ +
Sbjct: 166 QLTCHGNLC-HSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 224
Query: 325 KAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNA 146
+N LKT +L + D + + E + Q L ++ ID ++ I + +
Sbjct: 225 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKY 284
Query: 145 AKNKI-SIGAVGNLAFVP 95
N+ +I AVG + +P
Sbjct: 285 IYNRSPAIAAVGPIKQLP 302
>BC010398-1|AAH10398.1| 490|Homo sapiens PMPCB protein protein.
Length = 490
Score = 44.8 bits (101), Expect = 4e-04
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 9/196 (4%)
Frame = -2
Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 491
+ G E+R ++ LAH+A+AV+ P +GN + G N S LA
Sbjct: 279 FTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLA 338
Query: 490 KAI--GNIGPFAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAI 326
+ GN+ + FN SY+D GL+G+ + S + TS++ +
Sbjct: 339 QLTCHGNLC-HSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEV 397
Query: 325 KAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNA 146
+N LKT +L + D + + E + Q L ++ ID ++ I + +
Sbjct: 398 ARARNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKY 457
Query: 145 AKNKI-SIGAVGNLAF 101
N+ +I AVG F
Sbjct: 458 IYNRSPAIAAVGKPGF 473
>L16842-1|AAA20046.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core I protein protein.
Length = 480
Score = 37.9 bits (84), Expect = 0.042
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Frame = -2
Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGAD--NSPLA 491
+ G E+R ++ AHVA+AV+G SP +G+ T G +SPLA
Sbjct: 270 FTGSEIRHRDDALPFAHVAIAVEGPGWASPDSVALQVANAIIGHYDCTYGGGVHLSSPLA 329
Query: 490 K-AIGNIGPFAAAGFNVSYSDNGLFG---VVLSVPKDEXXXXXXXXXXXXKTSLSADAIK 323
A+ N + F++ Y++ GL G V + D+ TS + +
Sbjct: 330 SGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVA 389
Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTG 227
GKN L+ +++ D + + E + L G
Sbjct: 390 RGKNILRNALVSHLDGTTPVCEDIGRSLLTYG 421
>D26485-1|BAA05495.1| 480|Homo sapiens core I protein protein.
Length = 480
Score = 37.9 bits (84), Expect = 0.042
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Frame = -2
Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGAD--NSPLA 491
+ G E+R ++ AHVA+AV+G SP +G+ T G +SPLA
Sbjct: 270 FTGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLA 329
Query: 490 K-AIGNIGPFAAAGFNVSYSDNGLFG---VVLSVPKDEXXXXXXXXXXXXKTSLSADAIK 323
A+ N + F++ Y++ GL G V + D+ TS + +
Sbjct: 330 SGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVA 389
Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTG 227
GKN L+ +++ D + + E + L G
Sbjct: 390 RGKNILRNALVSHLDGTTPVCEDIGRSLLTYG 421
>BC009586-1|AAH09586.1| 480|Homo sapiens ubiquinol-cytochrome c
reductase core protein I protein.
Length = 480
Score = 37.9 bits (84), Expect = 0.042
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 7/152 (4%)
Frame = -2
Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGAD--NSPLA 491
+ G E+R ++ AHVA+AV+G SP +G+ T G +SPLA
Sbjct: 270 FTGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLA 329
Query: 490 K-AIGNIGPFAAAGFNVSYSDNGLFG---VVLSVPKDEXXXXXXXXXXXXKTSLSADAIK 323
A+ N + F++ Y++ GL G V + D+ TS + +
Sbjct: 330 SGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVA 389
Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTG 227
GKN L+ +++ D + + E + L G
Sbjct: 390 RGKNILRNALVSHLDGTTPVCEDIGRSLLTYG 421
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,103,291
Number of Sequences: 237096
Number of extensions: 1847916
Number of successful extensions: 3874
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3859
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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