Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b09
         (794 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089228-1|AAL89966.1|  440|Drosophila melanogaster AT02348p pro...   101   1e-21
AE014296-2761|AAF49444.1|  440|Drosophila melanogaster CG4169-PA...   101   1e-21
AY058243-1|AAL13472.1|  470|Drosophila melanogaster GH01077p pro...    38   0.016
AE014297-1916|AAN13622.1|  470|Drosophila melanogaster CG3731-PB...    38   0.016
AE014297-1915|AAF55110.2|  470|Drosophila melanogaster CG3731-PA...    38   0.016
AY058323-1|AAL13552.1|  556|Drosophila melanogaster GH09295p pro...    38   0.021
AE013599-541|AAF59168.1|  556|Drosophila melanogaster CG8728-PA ...    38   0.021
AE014296-1119|AAF50660.1| 1229|Drosophila melanogaster CG10144-P...    29   7.3  

>AY089228-1|AAL89966.1|  440|Drosophila melanogaster AT02348p
           protein.
          Length = 440

 Score =  101 bits (242), Expect = 1e-21
 Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 4/240 (1%)
 Frame = -2

Query: 787 ARNITPSRCAVTVIGDSQERAALIVQNLKLTSSDASQAEASTYYGGELRKEIGGDLAHVA 608
           A+     R AV  +G      A   Q L+  S   S+A ++ +YGG+ RK+  G  A VA
Sbjct: 201 AQTFAAGRAAVVGVGIDNNTLAGFAQTLQFPSG-GSKAASANWYGGDARKDTSGHRAVVA 259

Query: 607 LAVQGAPAGS-PQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNIGPFAAA--GFNVSY 437
           +A QGA A +  +          LG    TK G       +A+   G   A+    N SY
Sbjct: 260 VAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGEAVNCAGGVGASVKAVNASY 319

Query: 436 SDNGLFGVVLSVP-KDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVLNEADTGSSLA 260
           SD GLFG V+S   KD               S+S   +  GK  LK ++++   +   L 
Sbjct: 320 SDAGLFGFVVSADSKDIGKTVEFLVRGLKSASVSDKDVARGKALLKARIISRYSSDGGLI 379

Query: 259 ESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 80
           + +  Q   T +V  A  +   ID IS + + +A      +K+++GA+G+LA VPY  +L
Sbjct: 380 KEIGRQAALTRNVLEADALLGAIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDL 439


>AE014296-2761|AAF49444.1|  440|Drosophila melanogaster CG4169-PA
           protein.
          Length = 440

 Score =  101 bits (242), Expect = 1e-21
 Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 4/240 (1%)
 Frame = -2

Query: 787 ARNITPSRCAVTVIGDSQERAALIVQNLKLTSSDASQAEASTYYGGELRKEIGGDLAHVA 608
           A+     R AV  +G      A   Q L+  S   S+A ++ +YGG+ RK+  G  A VA
Sbjct: 201 AQTFAAGRAAVVGVGIDNNTLAGFAQTLQFPSG-GSKAASANWYGGDARKDTSGHRAVVA 259

Query: 607 LAVQGAPAGS-PQXXXXXXXXXXLGNGPVTKWGADNSPLAKAIGNIGPFAAA--GFNVSY 437
           +A QGA A +  +          LG    TK G       +A+   G   A+    N SY
Sbjct: 260 VAGQGAAASNHKEALAFAILEQALGAKAATKRGTSAGLFGEAVNCAGGVGASVKAVNASY 319

Query: 436 SDNGLFGVVLSVP-KDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQVLNEADTGSSLA 260
           SD GLFG V+S   KD               S+S   +  GK  LK ++++   +   L 
Sbjct: 320 SDAGLFGFVVSADSKDIGKTVEFLVRGLKSASVSDKDVARGKALLKARIISRYSSDGGLI 379

Query: 259 ESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAFVPYIDEL 80
           + +  Q   T +V  A  +   ID IS + + +A      +K+++GA+G+LA VPY  +L
Sbjct: 380 KEIGRQAALTRNVLEADALLGAIDGISQSQVQEAAKKVGSSKLAVGAIGHLANVPYASDL 439


>AY058243-1|AAL13472.1|  470|Drosophila melanogaster GH01077p
           protein.
          Length = 470

 Score = 37.9 bits (84), Expect = 0.016
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 8/197 (4%)
 Frame = -2

Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 491
           + G E+R ++    LAHVA+AV+G                 +G    ++ G  N  S LA
Sbjct: 260 FTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTLVGAWDRSQGGGANNASNLA 319

Query: 490 KAIGNIGP-FAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAIK 323
           +A        +   FN  Y D GL+G+      +  ++             T ++   ++
Sbjct: 320 RASAEDNLCHSFQSFNTCYKDTGLWGIYFVCDPLQCEDMLFNVQTEWMRLCTMVTEAEVE 379

Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAA 143
             KN LKT +L + D  + + E +  Q L         ++ + ID +S  ++        
Sbjct: 380 RAKNLLKTNMLLQLDGTTPICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYI 439

Query: 142 KNKI-SIGAVGNLAFVP 95
            ++  ++ AVG +  +P
Sbjct: 440 YDRCPAVAAVGPVENLP 456


>AE014297-1916|AAN13622.1|  470|Drosophila melanogaster CG3731-PB,
           isoform B protein.
          Length = 470

 Score = 37.9 bits (84), Expect = 0.016
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 8/197 (4%)
 Frame = -2

Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 491
           + G E+R ++    LAHVA+AV+G                 +G    ++ G  N  S LA
Sbjct: 260 FTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTLVGAWDRSQGGGANNASNLA 319

Query: 490 KAIGNIGP-FAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAIK 323
           +A        +   FN  Y D GL+G+      +  ++             T ++   ++
Sbjct: 320 RASAEDNLCHSFQSFNTCYKDTGLWGIYFVCDPLQCEDMLFNVQTEWMRLCTMVTEAEVE 379

Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAA 143
             KN LKT +L + D  + + E +  Q L         ++ + ID +S  ++        
Sbjct: 380 RAKNLLKTNMLLQLDGTTPICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYI 439

Query: 142 KNKI-SIGAVGNLAFVP 95
            ++  ++ AVG +  +P
Sbjct: 440 YDRCPAVAAVGPVENLP 456


>AE014297-1915|AAF55110.2|  470|Drosophila melanogaster CG3731-PA,
           isoform A protein.
          Length = 470

 Score = 37.9 bits (84), Expect = 0.016
 Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 8/197 (4%)
 Frame = -2

Query: 661 YYGGELR-KEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGADN--SPLA 491
           + G E+R ++    LAHVA+AV+G                 +G    ++ G  N  S LA
Sbjct: 260 FTGSEVRVRDDSLPLAHVAIAVEGCGWTDQDNIPLMVANTLVGAWDRSQGGGANNASNLA 319

Query: 490 KAIGNIGP-FAAAGFNVSYSDNGLFGVVL---SVPKDEXXXXXXXXXXXXKTSLSADAIK 323
           +A        +   FN  Y D GL+G+      +  ++             T ++   ++
Sbjct: 320 RASAEDNLCHSFQSFNTCYKDTGLWGIYFVCDPLQCEDMLFNVQTEWMRLCTMVTEAEVE 379

Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAA 143
             KN LKT +L + D  + + E +  Q L         ++ + ID +S  ++        
Sbjct: 380 RAKNLLKTNMLLQLDGTTPICEDIGRQILCYNRRIPLHELEQRIDAVSVGNVRDVAMKYI 439

Query: 142 KNKI-SIGAVGNLAFVP 95
            ++  ++ AVG +  +P
Sbjct: 440 YDRCPAVAAVGPVENLP 456


>AY058323-1|AAL13552.1|  556|Drosophila melanogaster GH09295p
           protein.
          Length = 556

 Score = 37.5 bits (83), Expect = 0.021
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
 Frame = -2

Query: 466 FAAAGFNVSYSDNGLFGVVLSVP---KDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQ 296
           ++A  +N +Y D GLF V  S P    ++                  + +   K QL++ 
Sbjct: 405 YSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPGREELMRSKIQLQSM 464

Query: 295 VLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAV 116
           +L   ++   + E +  Q L TG  +      K+I+ ++  DI +       +  S+ A 
Sbjct: 465 LLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIESVTAADIQRVAQRLLSSPPSVAAR 524

Query: 115 GNLAFVPYIDEL 80
           G++  +P +  +
Sbjct: 525 GDIHNLPEMSHI 536


>AE013599-541|AAF59168.1|  556|Drosophila melanogaster CG8728-PA
           protein.
          Length = 556

 Score = 37.5 bits (83), Expect = 0.021
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
 Frame = -2

Query: 466 FAAAGFNVSYSDNGLFGVVLSVP---KDEXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQ 296
           ++A  +N +Y D GLF V  S P    ++                  + +   K QL++ 
Sbjct: 405 YSATAYNHAYGDCGLFCVHGSAPPQHMNDMVEVLTREMMGMAAEPGREELMRSKIQLQSM 464

Query: 295 VLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAV 116
           +L   ++   + E +  Q L TG  +      K+I+ ++  DI +       +  S+ A 
Sbjct: 465 LLMNLESRPVVFEDVGRQVLVTGQRKRPQHFIKEIESVTAADIQRVAQRLLSSPPSVAAR 524

Query: 115 GNLAFVPYIDEL 80
           G++  +P +  +
Sbjct: 525 GDIHNLPEMSHI 536


>AE014296-1119|AAF50660.1| 1229|Drosophila melanogaster CG10144-PA
           protein.
          Length = 1229

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 271 SSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLAF 101
           SS AE + A    + +V + + I      I N D++Q +  A ++K   GAV +LAF
Sbjct: 112 SSAAERVNAGAASSCAVAAFIAIGTSHGHILNFDVTQTLRWAHQDKHGQGAVASLAF 168


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,149,161
Number of Sequences: 53049
Number of extensions: 591684
Number of successful extensions: 1388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3695805360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)