Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b09
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical pr... 66 4e-11
Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical pr... 64 1e-10
Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical pr... 64 1e-10
AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical ... 64 1e-10
AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical ... 64 1e-10
AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical ... 56 4e-08
U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AC025726-19|AAK73925.1| 477|Caenorhabditis elegans Mitochondria... 41 0.001
U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF125463-4|AAD12862.1| 243|Caenorhabditis elegans Hypothetical ... 30 2.2
AC024747-3|AAK85498.2| 318|Caenorhabditis elegans Hypothetical ... 28 6.7
Z82288-2|CAB05319.1| 485|Caenorhabditis elegans Hypothetical pr... 28 8.9
>Z72514-2|CAA96675.2| 422|Caenorhabditis elegans Hypothetical
protein T10B10.2 protein.
Length = 422
Score = 65.7 bits (153), Expect = 4e-11
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 2/209 (0%)
Frame = -2
Query: 700 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQ-XXXXXXXXXXLGNGPV 524
+ S +A+ +S Y GGE+R++ AHV +A +GA + + LGN
Sbjct: 223 IRSGNAASPSSSAYKGGEVRRDADSKYAHVIVAGEGAAGNNTKALATQAVLLTALGNSSP 282
Query: 523 TKWGADNS-PLAKAIGNIGPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKT 347
K+ + +AKA+G G +A+ F ++D+GL GV L V + K+
Sbjct: 283 VKFNTGTTGVIAKAVGQNG--SASAFQAVHADSGLAGVYLVVEGSQANQAVSNVVGALKS 340
Query: 346 SLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDI 167
AD I+A K Q L + + A A+Q L+ +S + + I +S +D+
Sbjct: 341 LKVAD-IEAVKKQAFNNALRASAHSDNFAIERASQ-LF----QSQDNYIQQIPNVSASDV 394
Query: 166 SQAVSNAAKNKISIGAVGNLAFVPYIDEL 80
A K+S+ + GN++ VPY+D L
Sbjct: 395 EVAAKKLT-TKLSLASYGNVSEVPYVDTL 422
>Z67734-5|CAD56227.1| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 64.1 bits (149), Expect = 1e-10
Identities = 59/207 (28%), Positives = 92/207 (44%)
Frame = -2
Query: 700 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVT 521
L + ++A + Y+GGE RK+ G+ ++VA+A +G+ S + V
Sbjct: 236 LAQNQPAKATPAKYFGGEARKDGRGNRSYVAIAGEGSAITSVKD--------------VA 281
Query: 520 KWGADNSPLAKAIGNIGPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKTSL 341
L A + A NV+Y D+GL GV + + K S
Sbjct: 282 VQAVVAQILLNAAQKVTS-EAISVNVNYQDSGLVGVQFAACNTQITQVTKSIASAIK-SA 339
Query: 340 SADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQ 161
AD + KN QVL++A S +A A Q L G S + A I ++ D++Q
Sbjct: 340 KADGLDNAKNTAAVQVLSDAQHASEVALEKATQVL-AGVEVSPREFADAIRAVTAQDVTQ 398
Query: 160 AVSNAAKNKISIGAVGNLAFVPYIDEL 80
A+S K+S+ A G+ + VPY+DEL
Sbjct: 399 ALSRV-NGKLSLAAYGSTSLVPYLDEL 424
>Z67734-4|CAB54182.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 64.1 bits (149), Expect = 1e-10
Identities = 59/207 (28%), Positives = 92/207 (44%)
Frame = -2
Query: 700 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVT 521
L + ++A + Y+GGE RK+ G+ ++VA+A +G+ S + V
Sbjct: 222 LAQNQPAKATPAKYFGGEARKDGRGNRSYVAIAGEGSAITSVKD--------------VA 267
Query: 520 KWGADNSPLAKAIGNIGPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKTSL 341
L A + A NV+Y D+GL GV + + K S
Sbjct: 268 VQAVVAQILLNAAQKVTS-EAISVNVNYQDSGLVGVQFAACNTQITQVTKSIASAIK-SA 325
Query: 340 SADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQ 161
AD + KN QVL++A S +A A Q L G S + A I ++ D++Q
Sbjct: 326 KADGLDNAKNTAAVQVLSDAQHASEVALEKATQVL-AGVEVSPREFADAIRAVTAQDVTQ 384
Query: 160 AVSNAAKNKISIGAVGNLAFVPYIDEL 80
A+S K+S+ A G+ + VPY+DEL
Sbjct: 385 ALSRV-NGKLSLAAYGSTSLVPYLDEL 410
>AL032678-2|CAC35829.2| 424|Caenorhabditis elegans Hypothetical
protein VW06B3R.1b protein.
Length = 424
Score = 64.1 bits (149), Expect = 1e-10
Identities = 59/207 (28%), Positives = 92/207 (44%)
Frame = -2
Query: 700 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVT 521
L + ++A + Y+GGE RK+ G+ ++VA+A +G+ S + V
Sbjct: 236 LAQNQPAKATPAKYFGGEARKDGRGNRSYVAIAGEGSAITSVKD--------------VA 281
Query: 520 KWGADNSPLAKAIGNIGPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKTSL 341
L A + A NV+Y D+GL GV + + K S
Sbjct: 282 VQAVVAQILLNAAQKVTS-EAISVNVNYQDSGLVGVQFAACNTQITQVTKSIASAIK-SA 339
Query: 340 SADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQ 161
AD + KN QVL++A S +A A Q L G S + A I ++ D++Q
Sbjct: 340 KADGLDNAKNTAAVQVLSDAQHASEVALEKATQVL-AGVEVSPREFADAIRAVTAQDVTQ 398
Query: 160 AVSNAAKNKISIGAVGNLAFVPYIDEL 80
A+S K+S+ A G+ + VPY+DEL
Sbjct: 399 ALSRV-NGKLSLAAYGSTSLVPYLDEL 424
>AL032678-1|CAB54320.1| 410|Caenorhabditis elegans Hypothetical
protein VW06B3R.1a protein.
Length = 410
Score = 64.1 bits (149), Expect = 1e-10
Identities = 59/207 (28%), Positives = 92/207 (44%)
Frame = -2
Query: 700 LTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXLGNGPVT 521
L + ++A + Y+GGE RK+ G+ ++VA+A +G+ S + V
Sbjct: 222 LAQNQPAKATPAKYFGGEARKDGRGNRSYVAIAGEGSAITSVKD--------------VA 267
Query: 520 KWGADNSPLAKAIGNIGPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKTSL 341
L A + A NV+Y D+GL GV + + K S
Sbjct: 268 VQAVVAQILLNAAQKVTS-EAISVNVNYQDSGLVGVQFAACNTQITQVTKSIASAIK-SA 325
Query: 340 SADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQ 161
AD + KN QVL++A S +A A Q L G S + A I ++ D++Q
Sbjct: 326 KADGLDNAKNTAAVQVLSDAQHASEVALEKATQVL-AGVEVSPREFADAIRAVTAQDVTQ 384
Query: 160 AVSNAAKNKISIGAVGNLAFVPYIDEL 80
A+S K+S+ A G+ + VPY+DEL
Sbjct: 385 ALSRV-NGKLSLAAYGSTSLVPYLDEL 410
>AF100306-6|AAC68920.1| 427|Caenorhabditis elegans Hypothetical
protein T24C4.1 protein.
Length = 427
Score = 55.6 bits (128), Expect = 4e-08
Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 3/201 (1%)
Frame = -2
Query: 673 EASTYYGGELRKEIGGDLAHVALAVQGAPAGSPQXXXXXXXXXXL-GNGPVTKWGA-DNS 500
+ S + GG+ R+ G+ H+ +A GA G + G K+ + S
Sbjct: 231 QGSPFRGGDYRRFARGNDVHIMVAGDGAAVGDLKFLAAQAVFLAHIGRASPLKFASLPGS 290
Query: 499 PLAKAIGNIGP-FAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXKTSLSADAIK 323
A+ N+ + F Y +GL GV L +T+ D I+
Sbjct: 291 TSGLALANLPEGVTGSAFQAPYDGSGLVGVYLLATGANADSAVRATVKVLRTTQVQD-IE 349
Query: 322 AGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAA 143
K + +L A+ A LA LY G +S ++ +I +I +D+ Q + AA
Sbjct: 350 GCKRRAIADILFNAENNVYSAYDLATNALYNGPEQS--ELIAEIQKIQESDV-QKYTKAA 406
Query: 142 KNKISIGAVGNLAFVPYIDEL 80
+++I A GN +PY DEL
Sbjct: 407 FERLAISAYGNYGRIPYADEL 427
>U13644-8|AAB52679.1| 471|Caenorhabditis elegans Hypothetical
protein F56D2.1 protein.
Length = 471
Score = 43.2 bits (97), Expect = 2e-04
Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 11/200 (5%)
Frame = -2
Query: 679 QAEASTYYGGELRKEIGGDLAHV--ALAVQGAPAGSPQXXXXXXXXXXLGNGPVTKWGAD 506
Q + + + G E R ++ H+ A AV+G +G VT +
Sbjct: 252 QVDGTRFTGSEYRYR-NDNVPHMYAAFAVEGVGYAHKDALALQIANQFIGQWDVTHATSR 310
Query: 505 N--SPLAKAIGNI-GPFAAAGFNVSYSDNGLFGVVLSVPKDEXXXXXXXXXXXXK----- 350
S L + IG+ G FN++Y D GLFG+ +
Sbjct: 311 TAASRLVQKIGHDHGVHNLQHFNINYKDTGLFGIYFVADAHDLNDTSGIMKSVAHEWKHL 370
Query: 349 -TSLSADAIKAGKNQLKTQVLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNN 173
++ + + + KNQ +T + +T + A A + LYTG++R ++ I ++
Sbjct: 371 ASAATEEEVAMAKNQFRTNLYQNLETNTQKAGFNAKELLYTGNLRQLSELEAQIQKVDAG 430
Query: 172 DISQAVSNAAKNKISIGAVG 113
+ +A+S ++ + AVG
Sbjct: 431 AVREAISRHVYDR-DLAAVG 449
>AC025726-19|AAK73925.1| 477|Caenorhabditis elegans Mitochondrial
processing peptidasealpha protein 1 protein.
Length = 477
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Frame = -2
Query: 466 FAAAGFNVSYSDNGLFGVVLSVPKD---EXXXXXXXXXXXXKTSLSADAIKAGKNQLKTQ 296
++A N SYSD+G+F V S P + + + + + + QL++
Sbjct: 332 YSAIAHNHSYSDSGVFTVTASSPPENINDALILLVHQILQLQQGVEPTELARARTQLRSH 391
Query: 295 VLNEADTGSSLAESLAAQGLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAV 116
++ + L E + Q L G + + A+ I++++N+DI + +K S+
Sbjct: 392 LMMNLEVRPVLFEDMVRQVLGHGDRKQPEEYAEKIEKVTNSDIIRVTERLLASKPSLVGY 451
Query: 115 GNL 107
G++
Sbjct: 452 GDI 454
>U58760-4|AAK31462.2| 678|Caenorhabditis elegans Hypothetical
protein C27A2.4 protein.
Length = 678
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 241 GLYTGSVRSAVDIAKDIDQISNNDISQAVSNAAKNKISIGAVGNLA 104
GLYT + VD+ K+I ++ + + + KNK+ G A
Sbjct: 238 GLYTSKSENGVDVGKEIQKLRSGPLVSEIFERMKNKLDCQVGGGRA 283
>AF125463-4|AAD12862.1| 243|Caenorhabditis elegans Hypothetical
protein Y49F6C.5 protein.
Length = 243
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 67 NTEFTIHLYREQMLSFQQRQLKSCSLPHSRQPARCHYWISGRY 195
N + +HL ++F R+ + C L S +P+RC + I+ +Y
Sbjct: 186 NVDGILHLAHMNEMAFVIRKCEECLLDKSDRPSRCIFKIAKQY 228
>AC024747-3|AAK85498.2| 318|Caenorhabditis elegans Hypothetical
protein Y110A2AM.1 protein.
Length = 318
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -2
Query: 742 DSQERAALIVQNLKLTSSDASQAEASTYYGGELRKEIGGDLAHVALAVQGAP-AGSPQ 572
D++ AA + +A +A+A G+ R E+G L + AV G P A +PQ
Sbjct: 149 DARLEAAAAADRRERFLQEAQEADARRAADGDARAELGEQLRALEAAVAGLPEAQAPQ 206
>Z82288-2|CAB05319.1| 485|Caenorhabditis elegans Hypothetical
protein ZK896.4 protein.
Length = 485
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -2
Query: 532 GPVTKWGADNSPLAKAIGNI--GPFAAAGFNVSYSDNG-LFGVVLSV 401
GPV +G S K+ G I GPF + GF+ S S G L VV+S+
Sbjct: 433 GPVYAFGDSISVSYKSNGGISSGPFISFGFDNSASSQGILVTVVVSI 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,733
Number of Sequences: 27780
Number of extensions: 286428
Number of successful extensions: 625
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -