Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b07
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   185   7e-48
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   153   2e-38
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    45   1e-05
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    27   3.1  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   4.1  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   9.4  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.4  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 778

 Score =  185 bits (450), Expect = 7e-48
 Identities = 87/146 (59%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
 Frame = -2

Query: 781  GEYGPVPATARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 602
            GEY  VP  A  Y+  G+RW  +G++N+GEGSSREHAALEPR+LGG A+I KSFARIHET
Sbjct: 633  GEYKTVPNVAIDYRDHGIRWVTLGEQNFGEGSSREHAALEPRYLGGAAVITKSFARIHET 692

Query: 601  NLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTD-RIKLNH 425
            NLKKQG+LPLTFA+ A YDKI P D + + GL + APGKP+   +   DGS +   KLNH
Sbjct: 693  NLKKQGLLPLTFADPAAYDKISPFDTVDIDGLTTFAPGKPLTLVVHPADGSAEWSTKLNH 752

Query: 424  SLNDQQINWFKAGSALNRMKEIASGK 347
            + N  QI WFKAGSALN M  +   K
Sbjct: 753  TFNKDQIEWFKAGSALNHMANMHKQK 778


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 905

 Score =  153 bits (372), Expect = 2e-38
 Identities = 74/140 (52%), Positives = 95/140 (67%), Gaps = 3/140 (2%)
 Frame = -2

Query: 766  VPATARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQ 587
            +P     +K  G  W VV + NYGEGS+REHAAL+PR + GR I+ KSFARIHETNLKKQ
Sbjct: 647  IPELMWKWKKDGQPWLVVAEHNYGEGSAREHAALQPRAMNGRIILTKSFARIHETNLKKQ 706

Query: 586  GMLPLTFANAADYDKIKPDDKISLLGLNSLAPG---KPVDCEIKHKDGSTDRIKLNHSLN 416
            G+LPLTF N ADY+KI  +DK+S  G+  L  G   +P+   +  KDGS   I   H+++
Sbjct: 707  GVLPLTFVNEADYEKIDAEDKVSTRGIEQLLEGVLDQPITLVVTKKDGSVVEIPCKHTMS 766

Query: 415  DQQINWFKAGSALNRMKEIA 356
              QI +FKAGSALN ++E A
Sbjct: 767  KDQIEFFKAGSALNLIREKA 786


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = -2

Query: 718 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPL 572
           +V  +N+G GSSREHA       G R II  SFA I   N  K GMLP+
Sbjct: 607 LVAHDNFGCGSSREHAPWALNDFGIRVIIAPSFADIFFNNCFKNGMLPI 655


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 718 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPL 572
           +V   N+G GSSRE AA      G   ++  SF+ I + N     +L +
Sbjct: 594 LVSGFNFGTGSSREQAATAILSRGIPLVVGGSFSDIFKRNSINNALLAI 642


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 694 EGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGML 578
           +G+   +A   P HLG  +  V++ A+IHE  LK   +L
Sbjct: 794 KGNLVANAPHMPVHLGSMSTCVRTQAKIHEGKLKPGDVL 832


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 304 SNASVSFNTNLFSFTFRKRFPSFC 375
           SN   +FN+ LF F F    PS C
Sbjct: 197 SNFPSNFNSELFPFYFHDVVPSIC 220


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -2

Query: 601 NLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDR 440
           N   QG+ P  F +  D   ++P   +S    +S     P    I     S+D+
Sbjct: 50  NTNTQGIFPSNFVHCLDIPTVRPGSSMSRTSASSFRYSSPQKSSIDTPITSSDQ 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,203
Number of Sequences: 5004
Number of extensions: 46127
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)