Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b07
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 62 5e-10
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200... 60 2e-09
02_05_0174 - 26486955-26487728 45 6e-05
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 32 0.46
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814... 30 1.8
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 29 5.6
05_05_0392 + 24629528-24630442 28 9.8
>08_01_0606 -
5321751-5321819,5321950-5322192,5322279-5322377,
5322463-5322942,5323069-5323167,5323306-5323427,
5323517-5323635,5323734-5323801,5323889-5324074,
5324169-5324244,5324339-5324418,5324505-5324561,
5324980-5325122,5325208-5325352,5325652-5325813,
5325893-5326078,5326263-5326355,5326437-5326597,
5327005-5327109,5328263-5328278
Length = 902
Score = 62.1 bits (144), Expect = 5e-10
Identities = 32/72 (44%), Positives = 41/72 (56%)
Frame = -2
Query: 754 ARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLP 575
A YK+ G V+ YG GSSR+ AA P LG +A+I KSF RIH +NL G++P
Sbjct: 765 ALKYKSEGHDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIP 824
Query: 574 LTFANAADYDKI 539
L F D D +
Sbjct: 825 LCFKAGEDADSL 836
>03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,
2008214-2008693,2008806-2008904,2009097-2009218,
2009296-2009414,2009492-2009559,2009832-2010017,
2010323-2010425,2010477-2010556,2010638-2010694,
2010771-2010913,2010988-2011132,2011501-2011662,
2011759-2011944,2012273-2012365,2012893-2013053,
2013440-2013547,2013664-2013928
Length = 995
Score = 60.5 bits (140), Expect = 2e-09
Identities = 33/81 (40%), Positives = 43/81 (53%)
Frame = -2
Query: 781 GEYGPVPATARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 602
GE V A YK G ++ YG GSSR+ AA P G +A+I KSF RIH +
Sbjct: 849 GEKLSVFDAATKYKNEGHDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRS 908
Query: 601 NLKKQGMLPLTFANAADYDKI 539
NL G++PL F + D D +
Sbjct: 909 NLAGMGIIPLCFKSGEDADTL 929
>02_05_0174 - 26486955-26487728
Length = 257
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -2
Query: 718 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG-MLPLTFANAADYDK 542
++G N+G GSSREHA + G RA++ + +ARI N G + PL A+ + +
Sbjct: 141 IIGGANFGCGSSREHAPVALGAAGARAVVAEGYARIFFRNSVATGEVYPLELADTGAWKE 200
Query: 541 IKPDDKISL 515
K D +++
Sbjct: 201 CKTGDVVTV 209
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = -2
Query: 625 SFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPV 479
S +IH ++ + PLTFA D KP K+ GL PG PV
Sbjct: 271 SMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGL----PGNPV 315
>03_05_0979 -
29380899-29381063,29381157-29381210,29381451-29381456,
29382167-29382280,29382379-29382422,29382540-29382615
Length = 152
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 609 WILANDLTMMARPPRCRGSSAACSRDE 689
W ++ + +RPPRC G A C R E
Sbjct: 49 WAAMSEALIGSRPPRCEGKCAPCGRCE 75
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 642 RPPRCRGSSAACSRDEPSP*FSSPTTHQRTPAALYARAVA 761
RPPR R ++CSR +P + + +R P A + A+A
Sbjct: 69 RPPRTRSRRSSCSRAARTPPSGARSPRRRRPGAGESVAIA 108
>05_05_0392 + 24629528-24630442
Length = 304
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 645 PPRCRGSSAACSRDEPSP*FSSPTTHQRTPAALYARAVAGTGP 773
PP R +R PSP P +RT A+ A A A +GP
Sbjct: 177 PPPRREPGERPTRRSPSPATKRPPDQRRTAASAGAAAGAASGP 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,543,203
Number of Sequences: 37544
Number of extensions: 310509
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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