Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b07
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase prote... 236 1e-62
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 236 1e-62
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 236 1e-62
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 29 3.8
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 29 3.8
U58761-3|AAB00714.4| 456|Caenorhabditis elegans Hypothetical pr... 28 8.9
U14635-7|AAC46658.2| 521|Caenorhabditis elegans Hypothetical pr... 28 8.9
U14635-6|AAP86617.1| 517|Caenorhabditis elegans Hypothetical pr... 28 8.9
>L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase protein
2, isoform c protein.
Length = 683
Score = 236 bits (578), Expect = 1e-62
Identities = 108/141 (76%), Positives = 119/141 (84%)
Frame = -2
Query: 781 GEYGPVPATARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 602
GEYG VPATAR YKA GVRW +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET
Sbjct: 538 GEYGAVPATARKYKADGVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 597
Query: 601 NLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHS 422
NLKKQGMLPLTFAN ADYDKI P D +S++GL+S APGKP+ K +GS + LNH+
Sbjct: 598 NLKKQGMLPLTFANPADYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHT 657
Query: 421 LNDQQINWFKAGSALNRMKEI 359
N+QQI WFKAGSALNRMKE+
Sbjct: 658 FNEQQIEWFKAGSALNRMKEV 678
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 236 bits (578), Expect = 1e-62
Identities = 108/141 (76%), Positives = 119/141 (84%)
Frame = -2
Query: 781 GEYGPVPATARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 602
GEYG VPATAR YKA GVRW +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET
Sbjct: 520 GEYGAVPATARKYKADGVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 579
Query: 601 NLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHS 422
NLKKQGMLPLTFAN ADYDKI P D +S++GL+S APGKP+ K +GS + LNH+
Sbjct: 580 NLKKQGMLPLTFANPADYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHT 639
Query: 421 LNDQQINWFKAGSALNRMKEI 359
N+QQI WFKAGSALNRMKE+
Sbjct: 640 FNEQQIEWFKAGSALNRMKEV 660
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein 2,
isoform a protein.
Length = 777
Score = 236 bits (578), Expect = 1e-62
Identities = 108/141 (76%), Positives = 119/141 (84%)
Frame = -2
Query: 781 GEYGPVPATARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 602
GEYG VPATAR YKA GVRW +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET
Sbjct: 632 GEYGAVPATARKYKADGVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 691
Query: 601 NLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHS 422
NLKKQGMLPLTFAN ADYDKI P D +S++GL+S APGKP+ K +GS + LNH+
Sbjct: 692 NLKKQGMLPLTFANPADYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHT 751
Query: 421 LNDQQINWFKAGSALNRMKEI 359
N+QQI WFKAGSALNRMKE+
Sbjct: 752 FNEQQIEWFKAGSALNRMKEV 772
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical protein
ZK455.1 protein.
Length = 887
Score = 60.1 bits (139), Expect = 2e-09
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Frame = -2
Query: 781 GEYGPVPATARAYKAAGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHET 602
GE + A+ YK AG+ ++ + YG GSSR+ AA P G +A+I +SF RIH +
Sbjct: 745 GEELDIFDAAQKYKDAGIPAIILAGKEYGCGSSRDWAAKGPFLQGVKAVIAESFERIHRS 804
Query: 601 NLKKQGMLPLTFANAADYDK--IKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLN 428
NL G++P + + D + ++ S+ + L PG+ +D + +GS ++
Sbjct: 805 NLIGMGIIPFQYQAGQNADSLGLTGKEQFSIGVPDDLKPGQLIDVNV--SNGSVFQVICR 862
Query: 427 HSLNDQQINWFKAGSALNRM 368
+ ++ +++ G L M
Sbjct: 863 FD-TEVELTYYRNGGILQYM 881
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 640 AIIVKSFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGL 506
A++V +++ NL+ QG+LP + A+ A I D K LGL
Sbjct: 70 AMVVSETKFLYDCNLEDQGILPSSNAHVAYILSIAVDKKFRRLGL 114
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 640 AIIVKSFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGL 506
A++V +++ NL+ QG+LP + A+ A I D K LGL
Sbjct: 97 AMVVSETKFLYDCNLEDQGILPSSNAHVAYILSIAVDKKFRRLGL 141
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 642 RPPRCRGSSAACSRDEPSP*FSSPTTHQRT 731
R P+ RG+SAA S P S+PTT +T
Sbjct: 913 RAPKRRGTSAASSSSNGMPSSSAPTTRSQT 942
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 642 RPPRCRGSSAACSRDEPSP*FSSPTTHQRT 731
R P+ RG+SAA S P S+PTT +T
Sbjct: 913 RAPKRRGTSAASSSSNGMPSSSAPTTRSQT 942
>U58761-3|AAB00714.4| 456|Caenorhabditis elegans Hypothetical
protein C01F1.6 protein.
Length = 456
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 411 WSFNEWLSLMRSVLPS-LCLISQSTGL 488
W F W+ L+ +LPS +CLI + L
Sbjct: 144 WDFQSWIPLLSRILPSDVCLIYKKGNL 170
>U14635-7|AAC46658.2| 521|Caenorhabditis elegans Hypothetical
protein C27H5.4a protein.
Length = 521
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 375 LSAEPALNQLICWSFNEWLSLMRSVLPSLCLISQS 479
LS P + + C ++++W+ L ++ P++C I +S
Sbjct: 466 LSGYPTVAE--CTNYSQWMFLALAIFPAICAIGES 498
>U14635-6|AAP86617.1| 517|Caenorhabditis elegans Hypothetical
protein C27H5.4b protein.
Length = 517
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 375 LSAEPALNQLICWSFNEWLSLMRSVLPSLCLISQS 479
LS P + + C ++++W+ L ++ P++C I +S
Sbjct: 462 LSGYPTVAE--CTNYSQWMFLALAIFPAICAIGES 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,074,696
Number of Sequences: 27780
Number of extensions: 263189
Number of successful extensions: 665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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