Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b06
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    29   0.34 
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    28   0.60 
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   1.0  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   5.6  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   5.6  
SPAC4G8.02c |sss1||translocon gamma subunit Sss1|Schizosaccharom...    25   7.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   9.7  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 268 MKLQNSVYMFLGIFQR-SSLSETYSLFN*SYKFRNVVEFCFFENPFFSNIIVNHQF 432
           +KL N + M+   F    +  +TYSL   S +  N+    +F N   SN+I  +Q+
Sbjct: 345 IKLCNHILMYQATFNEVKNFLQTYSLNMLSIEMENIEGSLYFGNAQLSNLICVNQY 400


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
 Frame = -3

Query: 327 RERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLCV 148
           +ER    + KK  Y++LQ   +E  Q +  M D  +   L  I  Q     ++  + L  
Sbjct: 62  KERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILAE 121

Query: 147 VSRE----CGSTLNSNDIESTDRAKVLQQKGSPNVSSDFT 40
           + R+         N N       A + Q K + N SS  T
Sbjct: 122 IERDKKRRAAERENKNSSVKETAAPIKQPKNA-NSSSTCT 160


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -3

Query: 381 EFYNITELIRLVKERICLRERRPLKDS-KKHVYRVLQFHEEELTQMVSTMSDGWKFEQLI 205
           E+ +I  L+ +V +    ++ R L+    KHV R+L   +  L+     +S  W+ + +I
Sbjct: 86  EWSSIDSLVPIVVDLPSKKQNRLLQSCITKHVDRLLDLCKRNLSTFTIDISSSWR-QNII 144

Query: 204 NIGSQYNYGNDEHAEFLCVVSRECGSTLN 118
                    N+E  EF C  +   G  LN
Sbjct: 145 E--------NNEQKEFECTSTAITGCLLN 165


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 373 VEFCFFENPFFSNIIVNHQF 432
           +EF F ENPFF+N I+   +
Sbjct: 208 LEFEFAENPFFTNKILTKTY 227


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 324 ERRPLKDSKKHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAE 160
           + RP +D K    RVL+  ++ L    + M      +  INI  +Y Y  D+H E
Sbjct: 657 DSRPFQDPK----RVLECLQKSLKIADACMDQLTSLKLFINILERYFYYYDQHCE 707


>SPAC4G8.02c |sss1||translocon gamma subunit
           Sss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 70

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 320 EDL*KIPRNMYTEFCSFMKR 261
           +DL +IP+N Y E   F+KR
Sbjct: 6   DDLFQIPKNFYKEGSHFIKR 25


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 282 VLQFHEEELTQMVSTMSDGWK 220
           VL   E+E+ Q++ T  D WK
Sbjct: 114 VLGLTEDEIQQILKTFRDSWK 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,804
Number of Sequences: 5004
Number of extensions: 33859
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)