Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b06
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 29 2.4
03_01_0394 + 3073903-3073954,3074052-3074161,3074234-3074368,307... 29 2.4
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 27 5.5
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825... 27 5.5
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 7.3
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 27 7.3
05_01_0553 + 4849535-4849553,4850727-4851913 27 9.6
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 27 9.6
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 27 9.6
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/75 (22%), Positives = 38/75 (50%)
Frame = -3
Query: 408 AEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQMVSTMSD 229
A E VL + ++ T+++ KE + R R + DS+ + L + L + +
Sbjct: 101 AREIVLSQIPYFCKTDIVVKCKEALKKR-LRAINDSRAQKRKALSQPNKRLRSLSEHVPH 159
Query: 228 GWKFEQLINIGSQYN 184
G++ + L+++ ++YN
Sbjct: 160 GYRRKSLLDVLTRYN 174
>03_01_0394 +
3073903-3073954,3074052-3074161,3074234-3074368,
3074461-3074616,3074793-3074876,3075069-3075115,
3075305-3075378,3075634-3075692,3076149-3076208,
3076826-3076906,3077033-3077086
Length = 303
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERI 334
VLN+LR G + ++ + +L EAE+Y + L + +R+
Sbjct: 69 VLNWLRDGAVPDMSESEYQQLLREAEYYQLLGLADCINDRL 109
>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +2
Query: 272 NCRTLYTCFLESFKGLLSLRHILSLTNLISSVML 373
N + T LES +GL SLRHI NL+S ML
Sbjct: 1060 NILPVLTTLLESMQGLTSLRHI----NLMSCPML 1089
>01_06_0517 +
29981537-29981927,29982024-29982231,29982373-29982544,
29984468-29984533,29984658-29984771,29984880-29984996,
29985097-29985223,29985317-29985603,29985701-29985891,
29985981-29986063,29986175-29986251,29986729-29986896
Length = 666
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 281 TLYTCFLESFKGLLSLRHILSLTNLIS 361
T L+ FKGLL ++H + T++IS
Sbjct: 220 TAMIIILQQFKGLLGMKHFTTKTDIIS 246
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.1 bits (57), Expect = 7.3
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -3
Query: 255 TQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLCVVSRECGSTLN----SNDIESTDRA 88
T + +S+GW +++G+ + +DEH E L +E S ++ S+D+ R+
Sbjct: 400 TLVSKAVSEGWLDSSFVHVGANGDVQDDEH-EKLRRYKKEAVSMIHEYFLSDDVPEIIRS 458
Query: 87 KVLQQKGSPNVSSDF 43
L++ GSP + F
Sbjct: 459 --LKELGSPEYNPVF 471
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 402 EGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQ 250
E + ++ EF I L K R+ ER+ L+ + V + +E+EL +
Sbjct: 120 ENLTKKVEFQKELAAIELEKTRVDYDERKKLEQQRAQVKSQMSRYEDELAR 170
>05_01_0553 + 4849535-4849553,4850727-4851913
Length = 401
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Frame = -3
Query: 426 VINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVLQFHEEELTQM 247
+I +D+ + + ++ N + + KE + L+ + ++ + + +EE+
Sbjct: 45 IIAHDMLMQESKDVIQYINQSSTASIKKEDLALKAKEEEEEENRKSKSKAEIDDEEMALF 104
Query: 246 VSTMSDGWKFEQLINIGSQYNYGN---DEHAEFLCVVSRECG 130
V + GS +Y N H+ +C V +E G
Sbjct: 105 VKKFGKFMRRSGFFKGGSSKHYSNKSSGRHSARVCYVCKEPG 146
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -3
Query: 321 RRPLKDSK--KHVYRVLQFHEEELTQMVSTMSDGWKFEQLINIGSQYNYGNDEHAEFLCV 148
++ LK SK KH+ FH+E+L +FE +++ S Y D A +
Sbjct: 637 KKKLKSSKEGKHIPIDAFFHKEKLQVAALPSKATLEFEHGVSLRSAYIVPEDVQAAGFQI 696
Query: 147 VSRECGSTLNSND 109
+ E S + S D
Sbjct: 697 DADELASIVESRD 709
>01_06_0358 -
28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 81 TLLHDLLTQCHYC*VYYHIHD*PHKGTLHV-HHCHSYTV 194
+LL L+ Q H + YH HD H+ +HV + HS +V
Sbjct: 697 SLLAHLIAQRH---IIYHYHDQGHELAMHVLYQLHSVSV 732
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,650,552
Number of Sequences: 37544
Number of extensions: 188540
Number of successful extensions: 488
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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