Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b06
(458 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031024-3|CAA19832.1| 308|Drosophila melanogaster EG:196F3.2 p... 169 2e-42
AE014298-230|AAF45642.1| 211|Drosophila melanogaster CG32810-PB... 169 2e-42
AY069257-1|AAL39402.1| 173|Drosophila melanogaster GM03763p pro... 58 8e-09
AY069350-1|AAL39495.1| 361|Drosophila melanogaster LD05823p pro... 48 8e-06
AE014297-80|AAF52131.3| 364|Drosophila melanogaster CG14647-PA ... 48 8e-06
AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA... 30 1.7
AY075507-1|AAL68316.1| 452|Drosophila melanogaster RE54525p pro... 28 6.9
AE014296-3396|AAF51624.2| 452|Drosophila melanogaster CG4786-PA... 28 6.9
AY118719-1|AAM50579.1| 512|Drosophila melanogaster AT29177p pro... 27 9.2
AF050630-1|AAD09205.1| 884|Drosophila melanogaster Ahr homolog ... 27 9.2
AE014297-2199|AAF55308.1| 884|Drosophila melanogaster CG6993-PA... 27 9.2
>AL031024-3|CAA19832.1| 308|Drosophila melanogaster EG:196F3.2
protein.
Length = 308
Score = 169 bits (411), Expect = 2e-42
Identities = 88/132 (66%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVL 277
VLNYLRHGKLV++ ++EEGVLEEAEFYN+T+LI L+KE I R++RP D KK VYRVL
Sbjct: 80 VLNYLRHGKLVLDG-VSEEGVLEEAEFYNVTQLIALLKECILHRDQRPQTD-KKRVYRVL 137
Query: 276 QFHEEELTQMVSTMSDGWKFEQLINIGSQY-NYGNDEHAEFLCVVSRECGSTLNSNDIES 100
Q E+ELTQM+ST+SDGW+FEQLI++ QY NYG E+ EFLCVVS+ECG+T ++E
Sbjct: 138 QCREQELTQMISTLSDGWRFEQLISM--QYTNYGPFENNEFLCVVSKECGTTA-GRELEL 194
Query: 99 TDRAKVLQQKGS 64
DRAKVLQQKGS
Sbjct: 195 NDRAKVLQQKGS 206
>AE014298-230|AAF45642.1| 211|Drosophila melanogaster CG32810-PB
protein.
Length = 211
Score = 169 bits (411), Expect = 2e-42
Identities = 88/132 (66%), Positives = 108/132 (81%), Gaps = 1/132 (0%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVL 277
VLNYLRHGKLV++ ++EEGVLEEAEFYN+T+LI L+KE I R++RP D KK VYRVL
Sbjct: 80 VLNYLRHGKLVLDG-VSEEGVLEEAEFYNVTQLIALLKECILHRDQRPQTD-KKRVYRVL 137
Query: 276 QFHEEELTQMVSTMSDGWKFEQLINIGSQY-NYGNDEHAEFLCVVSRECGSTLNSNDIES 100
Q E+ELTQM+ST+SDGW+FEQLI++ QY NYG E+ EFLCVVS+ECG+T ++E
Sbjct: 138 QCREQELTQMISTLSDGWRFEQLISM--QYTNYGPFENNEFLCVVSKECGTTA-GRELEL 194
Query: 99 TDRAKVLQQKGS 64
DRAKVLQQKGS
Sbjct: 195 NDRAKVLQQKGS 206
>AY069257-1|AAL39402.1| 173|Drosophila melanogaster GM03763p
protein.
Length = 173
Score = 57.6 bits (133), Expect = 8e-09
Identities = 26/34 (76%), Positives = 32/34 (94%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELI 355
VLNYLRHGKLV++ ++EEGVLEEAEFYN+T+LI
Sbjct: 80 VLNYLRHGKLVLDG-VSEEGVLEEAEFYNVTQLI 112
>AY069350-1|AAL39495.1| 361|Drosophila melanogaster LD05823p
protein.
Length = 361
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKD 304
++NYLRHG+ V +++I+ GVLEEA F+ I L+ ++ER+ +E PL D
Sbjct: 120 IINYLRHGQFVCDSNISVLGVLEEARFFGIFSLVTHLEERLGQQE-TPLGD 169
>AE014297-80|AAF52131.3| 364|Drosophila melanogaster CG14647-PA
protein.
Length = 364
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKD 304
++NYLRHG+ V +++I+ GVLEEA F+ I L+ ++ER+ +E PL D
Sbjct: 123 IINYLRHGQFVCDSNISVLGVLEEARFFGIFSLVTHLEERLGQQE-TPLGD 172
>AE013599-545|AAF59166.2| 922|Drosophila melanogaster CG14766-PA
protein.
Length = 922
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 378 FYNITELIRLVKERICLR-ERRPLKDSKKHVYRVLQFHEEELTQM 247
F I E +R+ +E C R E R L+DS ++ + H +LTQM
Sbjct: 167 FSKIVEAVRMFRE--CFRTEGRNLRDSNTPKWKSFKIHISQLTQM 209
>AY075507-1|AAL68316.1| 452|Drosophila melanogaster RE54525p
protein.
Length = 452
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 191 CEPILISCSNFQPSDIVETICVSSSS 268
CEP+ I C P + E IC+S ++
Sbjct: 91 CEPLAIQCKEICPMEEPEPICLSDNN 116
>AE014296-3396|AAF51624.2| 452|Drosophila melanogaster CG4786-PA
protein.
Length = 452
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 191 CEPILISCSNFQPSDIVETICVSSSS 268
CEP+ I C P + E IC+S ++
Sbjct: 91 CEPLAIQCKEICPMEEPEPICLSDNN 116
>AY118719-1|AAM50579.1| 512|Drosophila melanogaster AT29177p
protein.
Length = 512
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 126 YYHIHD*PHKGTLHVHHCHSYTVNQY 203
++H H PH H HH H T +Q+
Sbjct: 438 HHHAHPHPHSHHHHHHHHHHETAHQH 463
>AF050630-1|AAD09205.1| 884|Drosophila melanogaster Ahr homolog
spineless protein.
Length = 884
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 126 YYHIHD*PHKGTLHVHHCHSYTVNQY 203
++H H PH H HH H T +Q+
Sbjct: 810 HHHAHPHPHSHHHHHHHHHHETAHQH 835
>AE014297-2199|AAF55308.1| 884|Drosophila melanogaster CG6993-PA
protein.
Length = 884
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 126 YYHIHD*PHKGTLHVHHCHSYTVNQY 203
++H H PH H HH H T +Q+
Sbjct: 810 HHHAHPHPHSHHHHHHHHHHETAHQH 835
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,741,517
Number of Sequences: 53049
Number of extensions: 372365
Number of successful extensions: 922
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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