Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b06
(458 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41276-4|AAA82468.1| 272|Caenorhabditis elegans Temporarily ass... 137 3e-33
AF099914-3|AAC68758.2| 265|Caenorhabditis elegans Hypothetical ... 36 0.014
AF016681-4|AAB66174.2| 276|Caenorhabditis elegans Hypothetical ... 31 0.30
Z47358-7|CAA87435.1| 369|Caenorhabditis elegans Hypothetical pr... 31 0.53
U80842-12|AAB37942.1| 139|Caenorhabditis elegans Hypothetical p... 30 0.70
AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical ... 29 1.6
AF016681-7|AAB66176.1| 139|Caenorhabditis elegans Hypothetical ... 28 2.8
U80842-9|AAB37945.2| 258|Caenorhabditis elegans Hypothetical pr... 28 3.8
AF016655-2|AAK72056.2| 207|Caenorhabditis elegans Hypothetical ... 28 3.8
Z78061-3|CAB60286.1| 662|Caenorhabditis elegans Hypothetical pr... 27 5.0
U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl transfe... 27 5.0
AL117200-16|CAB60587.1| 662|Caenorhabditis elegans Hypothetical... 27 5.0
AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans alpha1,3-fuco... 27 5.0
AF025465-8|AAO38628.1| 233|Caenorhabditis elegans Hypothetical ... 27 6.6
AF016684-1|AAB66200.1| 290|Caenorhabditis elegans Hypothetical ... 27 6.6
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 27 8.7
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 27 8.7
AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical... 27 8.7
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 27 8.7
AF025464-6|AAB71012.2| 376|Caenorhabditis elegans Hypothetical ... 27 8.7
>U41276-4|AAA82468.1| 272|Caenorhabditis elegans Temporarily
assigned gene nameprotein 303 protein.
Length = 272
Score = 137 bits (332), Expect = 3e-33
Identities = 66/130 (50%), Positives = 90/130 (69%), Gaps = 1/130 (0%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVL 277
+LNYLRHGKL++N ++EEG+L EA+FYN+ L +L+ +RI RE + K VYRVL
Sbjct: 140 ILNYLRHGKLIMNPGLSEEGILAEADFYNLPSLSQLIMDRIQDRENSVKDATNKFVYRVL 199
Query: 276 QFHEEELTQMVSTMSDGWKFEQLINIGSQY-NYGNDEHAEFLCVVSRECGSTLNSNDIES 100
Q HEEEL +VS M+DGWK Q++ I S Y NY ++ E+LC+V REC N + +E
Sbjct: 200 QCHEEELASVVSAMTDGWKIVQVVPINSNYTNYTTEQPQEYLCIVERECPD--NGSMLEG 257
Query: 99 TDRAKVLQQK 70
DRAK+LQQ+
Sbjct: 258 QDRAKLLQQR 267
>AF099914-3|AAC68758.2| 265|Caenorhabditis elegans Hypothetical
protein C40A11.4 protein.
Length = 265
Score = 35.9 bits (79), Expect = 0.014
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Frame = -3
Query: 456 VLNYLRHGKLVI---NNDIAEEGVLEEAEFYNITELIR------LVKERICLRER-RPLK 307
+LNY+R G +++ N ++AE V EEAEFY + EL R +V+ RE R +
Sbjct: 93 ILNYMRDGDVLLPRNNKELAE--VREEAEFYQLNELARQCDSIWIVQYNKGPREMLRRIA 150
Query: 306 DSKKHVYRV-LQFHEEELTQMVSTMSDGWKFEQ 211
SKK + V H++EL S + +EQ
Sbjct: 151 GSKKDILVVWYSTHKDELINCPEDFSFPYFYEQ 183
>AF016681-4|AAB66174.2| 276|Caenorhabditis elegans Hypothetical
protein F22E5.8 protein.
Length = 276
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -3
Query: 456 VLNYLRHGKLVINN-DIAEEGVLEEAEFYNITELIRLVKERI 334
+LN++R G +V+ + ++ + +L EA+FY + ELI L +I
Sbjct: 58 ILNFMRDGDVVLPSCELTVKELLAEAQFYLLDELIELCSLKI 99
>Z47358-7|CAA87435.1| 369|Caenorhabditis elegans Hypothetical
protein ZK1307.9 protein.
Length = 369
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 15 YDHKKINKR*NQSSHSVSLFAATLLHDLLTQCHYC*VYYHIHD*P 149
++H + R N + ++ T LH+ +CH C YY I P
Sbjct: 60 HNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDP 104
>U80842-12|AAB37942.1| 139|Caenorhabditis elegans Hypothetical
protein ZC239.3 protein.
Length = 139
Score = 30.3 bits (65), Expect = 0.70
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAE-EGVLEEAEFYNITELIRLVKERICL 328
VLN++R G+ + + + + +L+EAE+Y +TEL K I +
Sbjct: 59 VLNFMRKGRADLPETLIDLKMLLDEAEYYELTELCDDCKREISI 102
>AF067216-9|AAC17520.2| 646|Caenorhabditis elegans Hypothetical
protein C35E7.4 protein.
Length = 646
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -3
Query: 159 FLCVVSRECGSTLNSNDIESTDRAKVLQQKGSPNVSSDFTFCLFFCDH 16
FL V + G+T++ N+I ++ +A V+++ N + + F+CDH
Sbjct: 325 FLKVPGQTLGATMDINEINTSLKADVVREPIRTNDVTLYPKYSFYCDH 372
>AF016681-7|AAB66176.1| 139|Caenorhabditis elegans Hypothetical
protein F22E5.12 protein.
Length = 139
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAE-EGVLEEAEFYNITELIRLVKERI 334
VLN++R G+ + + + + +L EAE+Y +TEL K I
Sbjct: 59 VLNFMRKGRADLPETLKDLKMLLGEAEYYELTELCDDCKREI 100
>U80842-9|AAB37945.2| 258|Caenorhabditis elegans Hypothetical
protein ZC239.6 protein.
Length = 258
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERI 334
+LN++R G + + + + +L EA FY + +L+R ++ I
Sbjct: 52 ILNFMRDGDVDLPQEYLNQ-LLREARFYGLVKLVRDCEQAI 91
>AF016655-2|AAK72056.2| 207|Caenorhabditis elegans Hypothetical
protein C17F4.8 protein.
Length = 207
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 456 VLNYLRHGKLVINNDIAE-EGVLEEAEFYNITELIRLVKERICLRERRPLKDSKK 295
+LN+LR G + + E V EA+FY + EL+ L +I + R + ++K
Sbjct: 61 ILNFLRDGDVDLPEQEKEINEVKREAQFYLLEELVDLCHRKINTKIRVLISGTEK 115
>Z78061-3|CAB60286.1| 662|Caenorhabditis elegans Hypothetical
protein C48G7.3 protein.
Length = 662
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 450 NYL-RHGKLVINNDIAEEGV-LEEAEFYNITELIRLVKERICLRERRPL 310
NYL +HG+ +++ I EE L + NI ++ V ++ LRE +PL
Sbjct: 299 NYLVKHGEGDLHHIIDEESSRLNSNQILNIDAVLEAVLHKLLLREVKPL 347
>U40028-3|AAW57826.1| 378|Caenorhabditis elegans Fucosyl
transferase protein 5 protein.
Length = 378
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 304 IFQRSSLSET-YSLFN*SYKFRNVVEFCFFENPFFSNIIVNHQF 432
+F ++ET S FN + ++ ENPFF+ + V H F
Sbjct: 98 VFHSRDINETKLSFFNKNRRYDIPYIMMAMENPFFAGLTVYHNF 141
>AL117200-16|CAB60587.1| 662|Caenorhabditis elegans Hypothetical
protein C48G7.3 protein.
Length = 662
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 450 NYL-RHGKLVINNDIAEEGV-LEEAEFYNITELIRLVKERICLRERRPL 310
NYL +HG+ +++ I EE L + NI ++ V ++ LRE +PL
Sbjct: 299 NYLVKHGEGDLHHIIDEESSRLNSNQILNIDAVLEAVLHKLLLREVKPL 347
>AJ745073-1|CAG32979.1| 378|Caenorhabditis elegans
alpha1,3-fucosyltransferase homologueprotein.
Length = 378
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 304 IFQRSSLSET-YSLFN*SYKFRNVVEFCFFENPFFSNIIVNHQF 432
+F ++ET S FN + ++ ENPFF+ + V H F
Sbjct: 98 VFHSRDINETKLSFFNKNRRYDIPYIMMAMENPFFAGLTVYHNF 141
>AF025465-8|AAO38628.1| 233|Caenorhabditis elegans Hypothetical
protein K02E7.4 protein.
Length = 233
Score = 27.1 bits (57), Expect = 6.6
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = -3
Query: 444 LRHGKLVINNDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYRVLQFHE 265
+R G + + + E V+ EA+FY + EL++L K + R K S + ++LQ
Sbjct: 1 MRDGDVTVTKN--HEEVMAEAKFYLLEELVKLCKP---VLPSRGFKISIINDEQLLQILA 55
Query: 264 EELTQMVSTMSDGWK--FEQLINIGSQ 190
EE + V S+ ++ F +L+N +
Sbjct: 56 EEPLKGVYRDSNNFQNFFSKLLNFSEK 82
>AF016684-1|AAB66200.1| 290|Caenorhabditis elegans Hypothetical
protein F45C12.11 protein.
Length = 290
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -3
Query: 417 NDIAEEGVLEEAEFYNITELIRLVKERICLRERRPLKDSKKHVYR 283
ND+ EG+L A+ Y+ ++R +E + + P K + +R
Sbjct: 217 NDLTVEGILHIADMYDTPMVVRKCEEFLIKGTKLPAKKKLQMAFR 261
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 204 NIGSQYNYGNDEHAEFLCVVSRECGSTLNSNDIESTDRAKVLQQKGS 64
N G+Q + +DEH + C+ E + + I+ D+A ++GS
Sbjct: 103 NDGAQSDSTSDEHIDVECMTETEMDTDEKDSTIKPEDQATPKLEEGS 149
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 204 NIGSQYNYGNDEHAEFLCVVSRECGSTLNSNDIESTDRAKVLQQKGS 64
N G+Q + +DEH + C+ E + + I+ D+A ++GS
Sbjct: 125 NDGAQSDSTSDEHIDVECMTETEMDTDEKDSTIKPEDQATPKLEEGS 171
>AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical
protein Y59A8B.22 protein.
Length = 552
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 277 QNSVYMFLGIFQRSSLSETYSLFN*SYKFRNVVEFCFFENPFFSNIIVNHQF-TVAKIIE 453
QN+ L +++ +L E L + +R +VE C F + FF+ + V F + KI E
Sbjct: 326 QNTEISVLKKWEKLALKEIRVLLLNIF-YRKIVEKCSFLDNFFATVTVTFIFGEIFKITE 384
Query: 454 D 456
D
Sbjct: 385 D 385
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -3
Query: 204 NIGSQYNYGNDEHAEFLCVVSRECGSTLNSNDIESTDRAKVLQQKGS 64
N G+Q + +DEH + C+ E + + I+ D+A ++GS
Sbjct: 125 NDGAQSDSTSDEHIDVECMTETEMDTDEKDSTIKPEDQATPKLEEGS 171
>AF025464-6|AAB71012.2| 376|Caenorhabditis elegans Hypothetical
protein F53G2.2 protein.
Length = 376
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 235 HCGNHLCQLLFMKLQNSVYMFLGIFQRSSLSETYSL 342
H +HL L+ K ++ +F+ +F R + SE+YS+
Sbjct: 155 HEHSHLKALVIGKSEDDRRIFIRLFDRMNASESYSI 190
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,868,928
Number of Sequences: 27780
Number of extensions: 189828
Number of successful extensions: 552
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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