Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b05
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   7.0  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.0  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    25   9.3  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.3  

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 337 WLTDTKLYNLVSLLKTNVNK 396
           WLT    + L+SL++TN NK
Sbjct: 133 WLTTDGTHQLLSLMETNFNK 152


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 210 NVFQRYLFTYLLNRATFVHIYVKVVEQFIFN 118
           NVF R+ F Y L       I+V  V  F+ N
Sbjct: 216 NVFNRFRFLYALGYGRLFGIFVLCVSLFLVN 246


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 216 PLNVFQRYLFTYLLNRATFVHIYVKVV 136
           PLN+ ++  F Y L  A F HI  K +
Sbjct: 280 PLNLSEKKFFAYQLQYAAFQHICQKTL 306


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 406 RLLHSK*NL*ARERNHISLVNNLIFIWNCHVQISKNK 516
           RLL     L  +ER++++  +N++F W+   Q  K K
Sbjct: 121 RLLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRK 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,097
Number of Sequences: 5004
Number of extensions: 65378
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)