Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b05
(782 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42439-1|AAA83505.1| 130|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 29 2.8
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 29 2.8
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 29 5.0
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 29 5.0
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 29 5.0
AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical... 28 6.6
Z70756-11|CAA94793.2| 368|Caenorhabditis elegans Hypothetical p... 28 8.7
>U42439-1|AAA83505.1| 130|Caenorhabditis elegans Hypothetical
protein F19C7.6 protein.
Length = 130
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/55 (23%), Positives = 33/55 (60%)
Frame = -3
Query: 267 HNQLNIGVVTNHWIPLHPLNVFQRYLFTYLLNRATFVHIYVKVVEQFIFNHLNVI 103
HN+ ++ ++ +HP+ ++ + ++ +L++ A FV ++ +V Q I L++I
Sbjct: 22 HNEARPTMIQSNQTKMHPILIWIQIIYKFLMSSAVFVGLFSTIV-QLIVGILSII 75
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 116 WLKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 220
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 402 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 436
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 116 WLKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 220
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 482 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 516
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 116 WLKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 220
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 402 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 436
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 116 WLKINCSTTFT*IWTKVALFSK*VNKYLWNTLSGC 220
W ++ C+T F I+ ++ + +YLWN S C
Sbjct: 478 WREVRCTTAFLEIFEQIRRLAYDSLRYLWNLHSNC 512
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 331 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 423
++WL DT LYN + ++K + N+ RLLH+K
Sbjct: 62 FIWLPDTTLYNSL-VMKDDENR---RLLHAK 88
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 331 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 423
++WL DT LYN + ++K + N+ RLLH+K
Sbjct: 62 FIWLPDTTLYNSL-VMKDDENR---RLLHAK 88
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 331 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 423
++WL DT LYN + ++K + N+ RLLH+K
Sbjct: 7 FIWLPDTTLYNSL-VMKDDENR---RLLHAK 33
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 331 YVWLTDTKLYNLVSLLKTNVNKVYVRLLHSK 423
++WL DT LYN + ++K + N+ RLLH+K
Sbjct: 104 FIWLPDTTLYNSL-VMKDDENR---RLLHAK 130
>AC024791-24|AAF60656.1| 627|Caenorhabditis elegans Hypothetical
protein Y47G6A.4 protein.
Length = 627
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 350 LSYIISFHYSKPTLTKYTCV 409
L+ SFH +KP+ TKY CV
Sbjct: 385 LNLFCSFHENKPSPTKYNCV 404
>Z70756-11|CAA94793.2| 368|Caenorhabditis elegans Hypothetical
protein T06E4.7 protein.
Length = 368
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 540 LNFLKNLHQIISFELFSRYSNIALLFEFPLHINMFGFFFKSKPLLIYF 683
++ + L+ I+SF LF Y ++ L + NMFG +F LLI F
Sbjct: 92 VSVISYLYAILSFPLFFFYRSMILA-----NSNMFGQYFTKNTLLITF 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,806,565
Number of Sequences: 27780
Number of extensions: 349317
Number of successful extensions: 665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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