Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b02
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...   174   1e-44
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...   152   6e-38
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    45   1e-05
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    27   3.0  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    27   3.9  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   9.1  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.1  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 778

 Score =  174 bits (423), Expect = 1e-44
 Identities = 81/133 (60%), Positives = 98/133 (73%), Gaps = 1/133 (0%)
 Frame = -3

Query: 758  RRPGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFA 579
            R  G+RW  +G++N+GEGSSREHAALEPR+LGG A+I KSFARIHETNLKKQG+LPLTFA
Sbjct: 646  RDHGIRWVTLGEQNFGEGSSREHAALEPRYLGGAAVITKSFARIHETNLKKQGLLPLTFA 705

Query: 578  NAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTD-RIKLNHSLNDQQINWFKAG 402
            + A YDKI P D + + GL + APGKP+   +   DGS +   KLNH+ N  QI WFKAG
Sbjct: 706  DPAAYDKISPFDTVDIDGLTTFAPGKPLTLVVHPADGSAEWSTKLNHTFNKDQIEWFKAG 765

Query: 401  SALNRMKEIASGK 363
            SALN M  +   K
Sbjct: 766  SALNHMANMHKQK 778


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 905

 Score =  152 bits (368), Expect = 6e-38
 Identities = 72/132 (54%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
 Frame = -3

Query: 758  RRPGVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFA 579
            ++ G  W VV + NYGEGS+REHAAL+PR + GR I+ KSFARIHETNLKKQG+LPLTF 
Sbjct: 655  KKDGQPWLVVAEHNYGEGSAREHAALQPRAMNGRIILTKSFARIHETNLKKQGVLPLTFV 714

Query: 578  NAADYDKIKPDDKISLLGLNSLAPG---KPVDCEIKHKDGSTDRIKLNHSLNDQQINWFK 408
            N ADY+KI  +DK+S  G+  L  G   +P+   +  KDGS   I   H+++  QI +FK
Sbjct: 715  NEADYEKIDAEDKVSTRGIEQLLEGVLDQPITLVVTKKDGSVVEIPCKHTMSKDQIEFFK 774

Query: 407  AGSALNRMKEIA 372
            AGSALN ++E A
Sbjct: 775  AGSALNLIREKA 786


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 24/49 (48%), Positives = 28/49 (57%)
 Frame = -3

Query: 734 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPL 588
           +V  +N+G GSSREHA       G R II  SFA I   N  K GMLP+
Sbjct: 607 LVAHDNFGCGSSREHAPWALNDFGIRVIIAPSFADIFFNNCFKNGMLPI 655


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 734 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPL 588
           +V   N+G GSSRE AA      G   ++  SF+ I + N     +L +
Sbjct: 594 LVSGFNFGTGSSREQAATAILSRGIPLVVGGSFSDIFKRNSINNALLAI 642


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 710 EGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGML 594
           +G+   +A   P HLG  +  V++ A+IHE  LK   +L
Sbjct: 794 KGNLVANAPHMPVHLGSMSTCVRTQAKIHEGKLKPGDVL 832


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 320 SNASVSFNTNLFSFTFRKRFPSFC 391
           SN   +FN+ LF F F    PS C
Sbjct: 197 SNFPSNFNSELFPFYFHDVVPSIC 220


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -3

Query: 617 NLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDR 456
           N   QG+ P  F +  D   ++P   +S    +S     P    I     S+D+
Sbjct: 50  NTNTQGIFPSNFVHCLDIPTVRPGSSMSRTSASSFRYSSPQKSSIDTPITSSDQ 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,593
Number of Sequences: 5004
Number of extensions: 45536
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)