Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17b02
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532...    58   1e-08
03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,200...    56   3e-08
02_05_0174 - 26486955-26487728                                         45   6e-05
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947...    32   0.44 
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814...    30   1.8  
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735...    28   7.2  

>08_01_0606 -
           5321751-5321819,5321950-5322192,5322279-5322377,
           5322463-5322942,5323069-5323167,5323306-5323427,
           5323517-5323635,5323734-5323801,5323889-5324074,
           5324169-5324244,5324339-5324418,5324505-5324561,
           5324980-5325122,5325208-5325352,5325652-5325813,
           5325893-5326078,5326263-5326355,5326437-5326597,
           5327005-5327109,5328263-5328278
          Length = 902

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 28/60 (46%), Positives = 36/60 (60%)
 Frame = -3

Query: 734 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKI 555
           V+    YG GSSR+ AA  P  LG +A+I KSF RIH +NL   G++PL F    D D +
Sbjct: 777 VLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSL 836


>03_01_0261 - 2007522-2007590,2007684-2007926,2008008-2008106,
            2008214-2008693,2008806-2008904,2009097-2009218,
            2009296-2009414,2009492-2009559,2009832-2010017,
            2010323-2010425,2010477-2010556,2010638-2010694,
            2010771-2010913,2010988-2011132,2011501-2011662,
            2011759-2011944,2012273-2012365,2012893-2013053,
            2013440-2013547,2013664-2013928
          Length = 995

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 26/60 (43%), Positives = 36/60 (60%)
 Frame = -3

Query: 734  VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAADYDKI 555
            ++    YG GSSR+ AA  P   G +A+I KSF RIH +NL   G++PL F +  D D +
Sbjct: 870  ILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRSNLAGMGIIPLCFKSGEDADTL 929


>02_05_0174 - 26486955-26487728
          Length = 257

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 734 VVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQG-MLPLTFANAADYDK 558
           ++G  N+G GSSREHA +     G RA++ + +ARI   N    G + PL  A+   + +
Sbjct: 141 IIGGANFGCGSSREHAPVALGAAGARAVVAEGYARIFFRNSVATGEVYPLELADTGAWKE 200

Query: 557 IKPDDKISL 531
            K  D +++
Sbjct: 201 CKTGDVVTV 209


>04_04_1465 +
           33794225-33794389,33794471-33794597,33794669-33794799,
           33795153-33795254,33795337-33795420,33795504-33795731,
           33795934-33796038,33796376-33796731,33797146-33797303,
           33797399-33797505,33797852-33798061
          Length = 590

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -3

Query: 641 SFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGLNSLAPGKPV 495
           S  +IH   ++ +   PLTFA     D  KP  K+   GL    PG PV
Sbjct: 271 SMGKIHFEKIRMKPGKPLTFAEIVTEDSSKPSKKVLAFGL----PGNPV 315


>03_05_0979 -
           29380899-29381063,29381157-29381210,29381451-29381456,
           29382167-29382280,29382379-29382422,29382540-29382615
          Length = 152

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 625 WILANDLTMMARPPRCRGSSAACSRDE 705
           W   ++  + +RPPRC G  A C R E
Sbjct: 49  WAAMSEALIGSRPPRCEGKCAPCGRCE 75


>10_08_0789 +
           20569738-20570207,20573425-20573464,20573484-20573536,
           20573633-20574212,20574323-20575384,20575631-20575813,
           20576112-20576199,20576285-20576532,20576712-20577053,
           20579026-20579163,20579521-20579547
          Length = 1076

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 658 RPPRCRGSSAACSRDEPSP*FSSPTTHQRTPG 753
           RPPR R   ++CSR   +P   + +  +R PG
Sbjct: 69  RPPRTRSRRSSCSRAARTPPSGARSPRRRRPG 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,233,601
Number of Sequences: 37544
Number of extensions: 293768
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)