Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17b02
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase prote... 210 8e-55
L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase prote... 210 8e-55
L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase prote... 210 8e-55
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 29 3.7
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 29 3.7
U58761-3|AAB00714.4| 456|Caenorhabditis elegans Hypothetical pr... 28 8.5
U14635-7|AAC46658.2| 521|Caenorhabditis elegans Hypothetical pr... 28 8.5
U14635-6|AAP86617.1| 517|Caenorhabditis elegans Hypothetical pr... 28 8.5
>L25599-9|AAN63393.1| 683|Caenorhabditis elegans Aconitase protein
2, isoform c protein.
Length = 683
Score = 210 bits (513), Expect = 8e-55
Identities = 95/125 (76%), Positives = 106/125 (84%)
Frame = -3
Query: 749 GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAA 570
GVRW +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFAN A
Sbjct: 554 GVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPA 613
Query: 569 DYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHSLNDQQINWFKAGSALN 390
DYDKI P D +S++GL+S APGKP+ K +GS + LNH+ N+QQI WFKAGSALN
Sbjct: 614 DYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHTFNEQQIEWFKAGSALN 673
Query: 389 RMKEI 375
RMKE+
Sbjct: 674 RMKEV 678
>L25599-8|AAL65788.1| 665|Caenorhabditis elegans Aconitase protein
2, isoform b protein.
Length = 665
Score = 210 bits (513), Expect = 8e-55
Identities = 95/125 (76%), Positives = 106/125 (84%)
Frame = -3
Query: 749 GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAA 570
GVRW +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFAN A
Sbjct: 536 GVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPA 595
Query: 569 DYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHSLNDQQINWFKAGSALN 390
DYDKI P D +S++GL+S APGKP+ K +GS + LNH+ N+QQI WFKAGSALN
Sbjct: 596 DYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHTFNEQQIEWFKAGSALN 655
Query: 389 RMKEI 375
RMKE+
Sbjct: 656 RMKEV 660
>L25599-7|AAA28050.2| 777|Caenorhabditis elegans Aconitase protein 2,
isoform a protein.
Length = 777
Score = 210 bits (513), Expect = 8e-55
Identities = 95/125 (76%), Positives = 106/125 (84%)
Frame = -3
Query: 749 GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAA 570
GVRW +GDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFAN A
Sbjct: 648 GVRWVAIGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANPA 707
Query: 569 DYDKIKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHSLNDQQINWFKAGSALN 390
DYDKI P D +S++GL+S APGKP+ K +GS + LNH+ N+QQI WFKAGSALN
Sbjct: 708 DYDKIDPSDNVSIVGLSSFAPGKPLTAIFKKTNGSKVEVTLNHTFNEQQIEWFKAGSALN 767
Query: 389 RMKEI 375
RMKE+
Sbjct: 768 RMKEV 772
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical protein
ZK455.1 protein.
Length = 887
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Frame = -3
Query: 749 GVRWCVVGDENYGEGSSREHAALEPRHLGGRAIIVKSFARIHETNLKKQGMLPLTFANAA 570
G+ ++ + YG GSSR+ AA P G +A+I +SF RIH +NL G++P +
Sbjct: 761 GIPAIILAGKEYGCGSSRDWAAKGPFLQGVKAVIAESFERIHRSNLIGMGIIPFQYQAGQ 820
Query: 569 DYDK--IKPDDKISLLGLNSLAPGKPVDCEIKHKDGSTDRIKLNHSLNDQQINWFKAGSA 396
+ D + ++ S+ + L PG+ +D + +GS ++ + ++ +++ G
Sbjct: 821 NADSLGLTGKEQFSIGVPDDLKPGQLIDVNV--SNGSVFQVICRFD-TEVELTYYRNGGI 877
Query: 395 LNRM 384
L M
Sbjct: 878 LQYM 881
>Z81073-6|CAN86904.2| 215|Caenorhabditis elegans Hypothetical
protein F30F8.10b protein.
Length = 215
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 656 AIIVKSFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGL 522
A++V +++ NL+ QG+LP + A+ A I D K LGL
Sbjct: 70 AMVVSETKFLYDCNLEDQGILPSSNAHVAYILSIAVDKKFRRLGL 114
>Z81073-5|CAE17804.3| 242|Caenorhabditis elegans Hypothetical
protein F30F8.10a protein.
Length = 242
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 656 AIIVKSFARIHETNLKKQGMLPLTFANAADYDKIKPDDKISLLGL 522
A++V +++ NL+ QG+LP + A+ A I D K LGL
Sbjct: 97 AMVVSETKFLYDCNLEDQGILPSSNAHVAYILSIAVDKKFRRLGL 141
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 658 RPPRCRGSSAACSRDEPSP*FSSPTTHQRT 747
R P+ RG+SAA S P S+PTT +T
Sbjct: 913 RAPKRRGTSAASSSSNGMPSSSAPTTRSQT 942
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 658 RPPRCRGSSAACSRDEPSP*FSSPTTHQRT 747
R P+ RG+SAA S P S+PTT +T
Sbjct: 913 RAPKRRGTSAASSSSNGMPSSSAPTTRSQT 942
>U58761-3|AAB00714.4| 456|Caenorhabditis elegans Hypothetical
protein C01F1.6 protein.
Length = 456
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 427 WSFNEWLSLMRSVLPS-LCLISQSTGL 504
W F W+ L+ +LPS +CLI + L
Sbjct: 144 WDFQSWIPLLSRILPSDVCLIYKKGNL 170
>U14635-7|AAC46658.2| 521|Caenorhabditis elegans Hypothetical
protein C27H5.4a protein.
Length = 521
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 391 LSAEPALNQLICWSFNEWLSLMRSVLPSLCLISQS 495
LS P + + C ++++W+ L ++ P++C I +S
Sbjct: 466 LSGYPTVAE--CTNYSQWMFLALAIFPAICAIGES 498
>U14635-6|AAP86617.1| 517|Caenorhabditis elegans Hypothetical
protein C27H5.4b protein.
Length = 517
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 391 LSAEPALNQLICWSFNEWLSLMRSVLPSLCLISQS 495
LS P + + C ++++W+ L ++ P++C I +S
Sbjct: 462 LSGYPTVAE--CTNYSQWMFLALAIFPAICAIGES 494
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,198
Number of Sequences: 27780
Number of extensions: 257943
Number of successful extensions: 646
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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