Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a23
(737 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT029645-1|ABL75704.1| 269|Drosophila melanogaster IP17216p pro... 214 1e-55
AE014296-329|AAF47545.1| 277|Drosophila melanogaster CG7977-PA ... 214 1e-55
DQ450529-1|ABE27283.1| 277|Drosophila melanogaster L23A ribosom... 212 4e-55
AF080130-1|AAD19340.1| 269|Drosophila melanogaster ribosomal pr... 207 1e-53
BT021430-1|AAX33578.1| 290|Drosophila melanogaster GM06171p pro... 43 4e-04
BT003457-1|AAO39460.1| 985|Drosophila melanogaster RH34107p pro... 31 2.2
AE014297-1126|AAF54512.1| 985|Drosophila melanogaster CG3999-PA... 31 2.2
M85049-1|AAA19661.1| 1638|Drosophila melanogaster brahma protein... 29 8.7
BT009972-1|AAQ22441.1| 1634|Drosophila melanogaster RE61274p pro... 29 8.7
AY095048-1|AAM11376.1| 1638|Drosophila melanogaster LD36356p pro... 29 8.7
AE014296-2605|AAF49557.1| 1638|Drosophila melanogaster CG5942-PB... 29 8.7
AE014296-2604|AAF49558.3| 1638|Drosophila melanogaster CG5942-PA... 29 8.7
AE014296-2603|AAN11774.1| 1634|Drosophila melanogaster CG5942-PD... 29 8.7
AE014296-2602|AAN11773.1| 1634|Drosophila melanogaster CG5942-PC... 29 8.7
>BT029645-1|ABL75704.1| 269|Drosophila melanogaster IP17216p
protein.
Length = 269
Score = 214 bits (522), Expect = 1e-55
Identities = 97/129 (75%), Positives = 112/129 (86%)
Frame = -2
Query: 388 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 209
A K Q+K++KG G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 134 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 193
Query: 208 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 29
LT+EAAMKKIEDNNTLVF+ H ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 194 LTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 253
Query: 28 ARDYDALDV 2
ARDYDALD+
Sbjct: 254 ARDYDALDI 262
>AE014296-329|AAF47545.1| 277|Drosophila melanogaster CG7977-PA
protein.
Length = 277
Score = 214 bits (522), Expect = 1e-55
Identities = 97/129 (75%), Positives = 112/129 (86%)
Frame = -2
Query: 388 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 209
A K Q+K++KG G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 201
Query: 208 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 29
LT+EAAMKKIEDNNTLVF+ H ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 202 LTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 261
Query: 28 ARDYDALDV 2
ARDYDALD+
Sbjct: 262 ARDYDALDI 270
>DQ450529-1|ABE27283.1| 277|Drosophila melanogaster L23A ribosomal
protein naturalvariant protein.
Length = 277
Score = 212 bits (518), Expect = 4e-55
Identities = 97/129 (75%), Positives = 111/129 (86%)
Frame = -2
Query: 388 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 209
A K Q+K++KG G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 142 AKKVQKKIIKGAFGTRARKIRANVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 201
Query: 208 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 29
LT+EAAMKKIEDNNTLVF+ H ANK H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 202 LTTEAAMKKIEDNNTLVFLTHLRANKSHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 261
Query: 28 ARDYDALDV 2
ARDYDALD+
Sbjct: 262 ARDYDALDI 270
>AF080130-1|AAD19340.1| 269|Drosophila melanogaster ribosomal
protein L23a protein.
Length = 269
Score = 207 bits (506), Expect = 1e-53
Identities = 96/129 (74%), Positives = 111/129 (86%)
Frame = -2
Query: 388 ALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFP 209
A K Q+K++K G R RKIR +VHFRRP T + PR PKYPRKS+P RNRMDAYNIIK+P
Sbjct: 135 AKKVQKKIIKA-FGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKYP 193
Query: 208 LTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKAYVRL 29
LT+EAAMKKIEDNNTLVF+ H ANK+H++AAV+KLYDI VAKVN LIRPDG+KKAYVRL
Sbjct: 194 LTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIRPDGQKKAYVRL 253
Query: 28 ARDYDALDV 2
ARDYDALD+
Sbjct: 254 ARDYDALDI 262
>BT021430-1|AAX33578.1| 290|Drosophila melanogaster GM06171p
protein.
Length = 290
Score = 43.2 bits (97), Expect = 4e-04
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = -1
Query: 272 IPKEVSA*EKSHGCLQHH*IPSHV*SSNEED*R*QHLGLYCSHKCKQAPYQGCSQETL*Y 93
+P+E+ A ++ HG +QHH +P+ +EED QH GL + +Q P S + L +
Sbjct: 163 VPQEIGAHQEPHGRVQHHQVPTDHRGGHEEDRGQQHPGLPHTPARQQEPRACRSAQALRH 222
Query: 92 KCC*SQHTHQA*W*EESV 39
+ + H A W EE +
Sbjct: 223 QGGQGERAHPARWPEEGL 240
>BT003457-1|AAO39460.1| 985|Drosophila melanogaster RH34107p
protein.
Length = 985
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 350 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 442
M+ Y+ P LK +NR H+F L+L + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398
>AE014297-1126|AAF54512.1| 985|Drosophila melanogaster CG3999-PA
protein.
Length = 985
Score = 30.7 bits (66), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 350 MFTFYNLPLSLKCFSNRFHYFFLSLNPSLFG 442
M+ Y+ P LK +NR H+F L+L + G
Sbjct: 368 MYAIYHGPEGLKAMANRIHHFTLTLQTGVLG 398
>M85049-1|AAA19661.1| 1638|Drosophila melanogaster brahma protein
protein.
Length = 1638
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 346 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIED 173
KR +K + + K + R P LP R R+ D Y IIK P+ + +++IED
Sbjct: 1424 KRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIED 1482
>BT009972-1|AAQ22441.1| 1634|Drosophila melanogaster RE61274p protein.
Length = 1634
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 346 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIED 173
KR +K + + K + R P LP R R+ D Y IIK P+ + +++IED
Sbjct: 1420 KRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIED 1478
>AY095048-1|AAM11376.1| 1638|Drosophila melanogaster LD36356p protein.
Length = 1638
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 346 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIED 173
KR +K + + K + R P LP R R+ D Y IIK P+ + +++IED
Sbjct: 1424 KRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIED 1482
>AE014296-2605|AAF49557.1| 1638|Drosophila melanogaster CG5942-PB,
isoform B protein.
Length = 1638
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 346 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIED 173
KR +K + + K + R P LP R R+ D Y IIK P+ + +++IED
Sbjct: 1424 KRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIED 1482
>AE014296-2604|AAF49558.3| 1638|Drosophila melanogaster CG5942-PA,
isoform A protein.
Length = 1638
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 346 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIED 173
KR +K + + K + R P LP R R+ D Y IIK P+ + +++IED
Sbjct: 1424 KRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIED 1482
>AE014296-2603|AAN11774.1| 1634|Drosophila melanogaster CG5942-PD,
isoform D protein.
Length = 1634
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 346 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIED 173
KR +K + + K + R P LP R R+ D Y IIK P+ + +++IED
Sbjct: 1420 KRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIED 1478
>AE014296-2602|AAN11773.1| 1634|Drosophila melanogaster CG5942-PC,
isoform C protein.
Length = 1634
Score = 28.7 bits (61), Expect = 8.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 346 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM-DAYNIIKFPLTSEAAMKKIED 173
KR +K + + K + R P LP R R+ D Y IIK P+ + +++IED
Sbjct: 1420 KRSKKQMHKIMSAVIKHNQDGRTLSEPFMKLPSRQRLPDYYEIIKRPVDIKKILQRIED 1478
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,412,534
Number of Sequences: 53049
Number of extensions: 454093
Number of successful extensions: 1412
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3334818762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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