Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a20
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513...    68   7e-12
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    36   0.036
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062...    29   3.1  
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980...    29   4.1  
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     29   5.4  
06_03_1302 - 29163974-29166907                                         28   9.5  

>01_01_0671 -
           5137787-5137843,5138420-5138503,5138595-5138662,
           5138854-5138935,5139282-5139346,5139504-5139747
          Length = 199

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
 Frame = -2

Query: 635 KKEDVPKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSV----TGDD 468
           KK+D  ++V + +  R K+K VTVV GL  F + L  A+K  G KFA G+SV    T  +
Sbjct: 101 KKKDKQEVV-IEKIVRNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKE 159

Query: 467 EIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQKR 360
           +I +QGD+  D+ + I + WP++ E +I  + D ++
Sbjct: 160 QIDVQGDISYDIVEFITDTWPDVPESAIFFIEDGRK 195


>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -2

Query: 617 KLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVT------GDDEIVI 456
           + +Q+    R   K +T +SGL  F +D    A     KFAC ++        G  E+++
Sbjct: 506 RTIQIMTERRQGNKKMTRLSGLECFLMDPDSLASELQKKFACSTTTAELPGKKGQHEVLV 565

Query: 455 QGDVKDDL 432
           QG V DDL
Sbjct: 566 QGGVIDDL 573


>04_04_1693 +
           35404336-35404515,35405732-35406019,35406189-35406278,
           35406487-35406564,35406638-35406718,35407300-35407350,
           35407788-35407933,35408169-35408235,35408328-35408387,
           35408472-35408501,35408776-35408835,35408936-35409052,
           35409790-35409903,35410068-35410166,35410572-35410697,
           35410774-35410848,35410958-35411029,35411167-35411277,
           35411760-35411843,35413149-35413256,35414207-35414308,
           35414393-35414455,35414524-35414598,35414901-35414972,
           35415063-35415187,35415251-35415302,35415380-35415448,
           35415525-35415540,35415941-35415989,35416607-35417180
          Length = 1077

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 476 GDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIEDLGDQKR*CPLH 345
           G + +V Q  ++D L     ++  ++ + ++  LGD  R CP+H
Sbjct: 675 GIESLVSQSSLRDILLQCCMDEAADVRQSALALLGDLSRVCPIH 718


>02_02_0597 -
           11996350-11996483,11997511-11997604,11997877-11998032,
           11998580-11998639,11998733-11998951,11999038-11999377,
           12001240-12001571
          Length = 444

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 431 FDIIPEKWPEIDEDSIEDLGDQ 366
           FD+IPEK  EID +S+E + D+
Sbjct: 178 FDLIPEKGWEIDLNSLESIADK 199


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -2

Query: 527 VAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDIIPEKWPEIDEDSIE 381
           V A+  G K  CG     DD +V+ GD  DD+  +  EK  E D  S E
Sbjct: 65  VMAQQKGGKPDCGGEEDDDDCVVLDGD-PDDVVAVAGEKGSEGDGSSDE 112


>06_03_1302 - 29163974-29166907
          Length = 977

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
 Frame = -2

Query: 416 EKWPEIDEDSIEDL--GDQKR 360
           +KW EI+E+ ++DL  GD+KR
Sbjct: 417 DKWKEIEENQVDDLVIGDKKR 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,550,321
Number of Sequences: 37544
Number of extensions: 288161
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)