Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a20
         (774 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007860-1|AAH07860.1|  198|Homo sapiens DENR protein protein.        143   5e-34
AF103800-1|AAF02420.1|  150|Homo sapiens unknown protein.             143   5e-34
AF038554-1|AAC02985.2|  243|Homo sapiens density regulated prote...   143   5e-34
AB014731-1|BAB20268.1|  198|Homo sapiens SMAP-3 protein.              143   5e-34

>BC007860-1|AAH07860.1|  198|Homo sapiens DENR protein protein.
          Length = 198

 Score =  143 bits (347), Expect = 5e-34
 Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 10/147 (6%)
 Frame = -2

Query: 770 KCKQWLEKNLPTEFEKVKLDXXXXXXXXXXXXXXXXXXXGMLKSKK----------KEDV 621
           KC+QWLEKN P EF K+ ++                      K +K          K+ V
Sbjct: 52  KCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTV 111

Query: 620 PKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVK 441
           P+ V +++ PR KKK VT V GL+TF+IDLK A +FF  KF+CG+SVTG+DEI+IQGD  
Sbjct: 112 PQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFT 171

Query: 440 DDLFDIIPEKWPEIDEDSIEDLGDQKR 360
           DD+ D+I EKWPE+D+DSIEDLG+ K+
Sbjct: 172 DDIIDVIQEKWPEVDDDSIEDLGEVKK 198


>AF103800-1|AAF02420.1|  150|Homo sapiens unknown protein.
          Length = 150

 Score =  143 bits (347), Expect = 5e-34
 Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 10/147 (6%)
 Frame = -2

Query: 770 KCKQWLEKNLPTEFEKVKLDXXXXXXXXXXXXXXXXXXXGMLKSKK----------KEDV 621
           KC+QWLEKN P EF K+ ++                      K +K          K+ V
Sbjct: 4   KCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTV 63

Query: 620 PKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVK 441
           P+ V +++ PR KKK VT V GL+TF+IDLK A +FF  KF+CG+SVTG+DEI+IQGD  
Sbjct: 64  PQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFT 123

Query: 440 DDLFDIIPEKWPEIDEDSIEDLGDQKR 360
           DD+ D+I EKWPE+D+DSIEDLG+ K+
Sbjct: 124 DDIIDVIQEKWPEVDDDSIEDLGEVKK 150


>AF038554-1|AAC02985.2|  243|Homo sapiens density regulated protein
           drp1 protein.
          Length = 243

 Score =  143 bits (347), Expect = 5e-34
 Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 10/147 (6%)
 Frame = -2

Query: 770 KCKQWLEKNLPTEFEKVKLDXXXXXXXXXXXXXXXXXXXGMLKSKK----------KEDV 621
           KC+QWLEKN P EF K+ ++                      K +K          K+ V
Sbjct: 97  KCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTV 156

Query: 620 PKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVK 441
           P+ V +++ PR KKK VT V GL+TF+IDLK A +FF  KF+CG+SVTG+DEI+IQGD  
Sbjct: 157 PQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFT 216

Query: 440 DDLFDIIPEKWPEIDEDSIEDLGDQKR 360
           DD+ D+I EKWPE+D+DSIEDLG+ K+
Sbjct: 217 DDIIDVIQEKWPEVDDDSIEDLGEVKK 243


>AB014731-1|BAB20268.1|  198|Homo sapiens SMAP-3 protein.
          Length = 198

 Score =  143 bits (347), Expect = 5e-34
 Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 10/147 (6%)
 Frame = -2

Query: 770 KCKQWLEKNLPTEFEKVKLDXXXXXXXXXXXXXXXXXXXGMLKSKK----------KEDV 621
           KC+QWLEKN P EF K+ ++                      K +K          K+ V
Sbjct: 52  KCRQWLEKNFPNEFAKLTVENSPKQEAGISEGQGTAGEEEEKKKQKRGGRGQIKQKKKTV 111

Query: 620 PKLVQVSRAPRGKKKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVK 441
           P+ V +++ PR KKK VT V GL+TF+IDLK A +FF  KF+CG+SVTG+DEI+IQGD  
Sbjct: 112 PQKVTIAKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFT 171

Query: 440 DDLFDIIPEKWPEIDEDSIEDLGDQKR 360
           DD+ D+I EKWPE+D+DSIEDLG+ K+
Sbjct: 172 DDIIDVIQEKWPEVDDDSIEDLGEVKK 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,648,346
Number of Sequences: 237096
Number of extensions: 1672535
Number of successful extensions: 3062
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3062
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)