Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a18
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 29 1.0
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 28 1.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.4
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 25 9.5
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 25 9.5
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 129 IVLSNSVDCSNSIQ*YVKDRYYTVTVANKDPSYETIISLHEHNMEDIAI 275
+ LSN + SN + + T+ +N D T+ S+H HN + +I
Sbjct: 380 LTLSNLAEKSNLKEAEIIQGNRTIQESNNDRDESTVASIHRHNFDSDSI 428
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = -3
Query: 769 QRFRHCVL*ISRIIVFKRCNINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKEIVL 599
+R ++ +L I+ IV+K N +++L K+T +DM + ++ K +E +
Sbjct: 48 RRPKNILLIINEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATETKEEAAI 104
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 712 NINFVLLSKITDDDMRYKIMRYSCDTKDLESQNKE 608
+INFV ITDD + Y+ DTK L N E
Sbjct: 847 SINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNE 881
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -1
Query: 156 NNRLN*IKLCRNDFYVCNYADILRT 82
N ++ ++ C N Y+C+Y+ RT
Sbjct: 264 NESMSSLEACINSLYLCDYSGFFRT 288
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 534 YYTNFIFPKIPNIKHIVNPLLYKTISLFCDSKSF 635
YYT +FP+ PN+ + N L + F D++SF
Sbjct: 203 YYTRLLFPEFPNV-YAFNDLSFH----FHDAQSF 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,852
Number of Sequences: 5004
Number of extensions: 57443
Number of successful extensions: 142
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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