Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a18
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48544-3|CAA88438.2|  239|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF047659-14|AAV34788.1|  429|Caenorhabditis elegans Hypothetical...    31   1.3  
AF047659-13|AAK82908.1|  503|Caenorhabditis elegans Hypothetical...    31   1.3  
AF047659-12|AAC04427.1|  507|Caenorhabditis elegans Hypothetical...    31   1.3  
Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein...    29   5.1  
AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z48544-3|CAA88438.2|  239|Caenorhabditis elegans Hypothetical
           protein ZK945.4 protein.
          Length = 239

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -3

Query: 667 RYKIMRYSCDTKDLESQNKEIVLYSNGLTMCFMLGI 560
           R  I+RY+CD  ++  + +++ +YS GL +  ++ +
Sbjct: 127 RSNILRYNCDFLEIIDRTEDLTIYSEGLRLIMIVDL 162


>AF047659-14|AAV34788.1|  429|Caenorhabditis elegans Hypothetical
           protein K07H8.2c protein.
          Length = 429

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 127 T*FYLIQSIVQIVYNNMLKIDIILLLWQIKIRPTKQLSPYM 249
           T  Y+I +I+Q+V    +   ++ LLW+ KI P   + PY+
Sbjct: 359 TSLYMIAAIIQVVILLFVCQLLVALLWKWKIDPDNSVIPYL 399


>AF047659-13|AAK82908.1|  503|Caenorhabditis elegans Hypothetical
           protein K07H8.2b protein.
          Length = 503

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 127 T*FYLIQSIVQIVYNNMLKIDIILLLWQIKIRPTKQLSPYM 249
           T  Y+I +I+Q+V    +   ++ LLW+ KI P   + PY+
Sbjct: 433 TSLYMIAAIIQVVILLFVCQLLVALLWKWKIDPDNSVIPYL 473


>AF047659-12|AAC04427.1|  507|Caenorhabditis elegans Hypothetical
           protein K07H8.2a protein.
          Length = 507

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 127 T*FYLIQSIVQIVYNNMLKIDIILLLWQIKIRPTKQLSPYM 249
           T  Y+I +I+Q+V    +   ++ LLW+ KI P   + PY+
Sbjct: 437 TSLYMIAAIIQVVILLFVCQLLVALLWKWKIDPDNSVIPYL 477


>Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical
           protein R10E11.4 protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 111 VCNYADILRTNLVFLLHYCWHSCDRM*CDF 22
           + N  D LR N   L++  W+  DR+ CD+
Sbjct: 88  IINQTDPLRFNRASLINVGWNEADRLGCDY 117


>AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein
           protein.
          Length = 289

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 111 VCNYADILRTNLVFLLHYCWHSCDRM*CDF 22
           + N  D LR N   L++  W+  DR+ CD+
Sbjct: 88  IINQTDPLRFNRASLINVGWNEADRLGCDY 117


>AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical
           protein T10B5.2 protein.
          Length = 380

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -3

Query: 769 QRFRHCVL*ISRIIVFKRCNINFVLLSKITDDDMRYKIMRYSCDTK 632
           Q+  +C+  + ++ + +R N + V+L+   + + R  I R  C TK
Sbjct: 245 QQTFYCISDLHKVCLHQRNNTSIVVLNNFFNSETRQNIRRNICTTK 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,048,603
Number of Sequences: 27780
Number of extensions: 308605
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)