Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a17
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   2.1  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   2.7  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   4.8  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    26   6.3  
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   8.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 106 AIHVGFSSSVGQRRRPTDIVNNSXVAAKKDAVIEC 2
           A+H  FS S+  R +    +  S +AA  D  I C
Sbjct: 247 ALHANFSVSISLRNKAIQHLLKSKIAANTDKAINC 281


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 602 PVSVAIDASHTSFQLYSSGVYNEEECSSTDLDHG 501
           P S + D    SF  +SSG +++E  + +D D G
Sbjct: 173 PTSFSNDLKKPSFNSFSSGSFDDEFSAPSDEDEG 206


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 329 SLPRSCNIHISYVYLWLS--YLCNMYNS 252
           +LP S  + I YVY W     LCN+ +S
Sbjct: 290 TLPHSSTVAIMYVYSWTGTVSLCNLVSS 317


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 435 PRVLHEPVVHALLVGAVT 488
           P V H P+ H LL G VT
Sbjct: 198 PLVAHSPLAHGLLTGRVT 215


>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 659 VDIPEGDEQKLMEAVATVGPVSVAID 582
           +D+P G  + L+ A  T  P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 580  ASMATETGPTVATASISFCSSPSGMSTKPTSSAPVFLGLYLHLSSTP 720
            +S A  T P + ++++   S+P   ST   +S P+     ++ SSTP
Sbjct: 1646 SSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN-SSTP 1691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,885
Number of Sequences: 5004
Number of extensions: 39951
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)