Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a15
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 64 2e-11
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 60 4e-10
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 59 9e-10
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 58 2e-09
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 56 5e-09
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 52 8e-08
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 51 2e-07
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 51 2e-07
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 48 2e-06
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 46 7e-06
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 46 9e-06
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 45 1e-05
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 37 0.003
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 33 0.039
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 30 0.47
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr... 29 0.83
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 2.5
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 7.7
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 7.7
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 64.5 bits (150), Expect = 2e-11
Identities = 50/219 (22%), Positives = 102/219 (46%), Gaps = 9/219 (4%)
Frame = -2
Query: 632 KLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILALVLV 453
K+LF S+RR+L + + G ++Q ++A +F + S + S+++
Sbjct: 321 KVLFTVPSNRRSLFIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSISV-SIVVGATNF 379
Query: 452 ASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWSWA-------SDWAVTLV--V 300
+ V +D RR +++C++ + +A+ + A S W ++ +
Sbjct: 380 VFTIVAFMFIDRIGRRRILLCTSAVMIAGLALCAIAYHFLPADTTQNTNSGWQYVVLASI 439
Query: 299 VIYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLD 120
+I+ SY G ++P+ +E F + R + + ++ N ++ F + + I
Sbjct: 440 IIFLASYASGIGNIPWQ-QAELFPMEVRALGAGFSTAINWVGNLIISASFLTMMESITPT 498
Query: 119 GTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMYEKG 3
GTF LF+ FV ++ +YFT E G+ ++ I K+ EKG
Sbjct: 499 GTFALFAGFCFVGLVTSYFTYPELAGMSIENIHKLLEKG 537
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 60.1 bits (139), Expect = 4e-10
Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 9/218 (4%)
Frame = -2
Query: 635 WKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILALVL 456
W +F R ++ ++ M+L +G YA Q+F K L +VIL +
Sbjct: 254 WPEVFGKEVRYRTVLGFLT-MLLRELIGNNYYFYYATQVF-KGTGMTDIFLPAVILGAIN 311
Query: 455 VASSCVGTFTMDLFKRRSLMICSTLMSSWCM---AVLGS--LLRWSWASDWAVTLVVVIY 291
++ +T+D RR+ +I S C A +G L+ + SD V++++
Sbjct: 312 FGTTFGALYTIDNLGRRNPLIFGAAFQSICFFIYAAVGDRKLIYKNGTSDHRAGAVMIVF 371
Query: 290 -C---FSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGL 123
C FSY + +V+ ETF + R + V + +L NF++ + + IG
Sbjct: 372 SCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCAAVATSGNWLGNFMVSFFTPFISNSIGF 431
Query: 122 DGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMYE 9
++++ I + + KETKG+ L+E+ ++YE
Sbjct: 432 K-LGYIYACINMTSAFQIFLMAKETKGLTLEEVNELYE 468
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 58.8 bits (136), Expect = 9e-10
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 9/218 (4%)
Frame = -2
Query: 638 AWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILALV 459
+W +F++ R L+ M +M G Y Q+F N SP L ++IL V
Sbjct: 255 SWPQIFSNEIRYRTLLGM-GVMAFQQLTGNNYFFYYGTQVFRGTGLN-SPFLAALILDAV 312
Query: 458 LVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGS-----LLRWSWASDWAVTLVVVI 294
+ F ++ F RR +I + S C + S L R + S+ V+++
Sbjct: 313 NFGCTFGAIFVLEYFGRRGPLIVGGVWQSICFFIYASVGDRALTRPNGTSNHRAGAVMIV 372
Query: 293 Y-C---FSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIG 126
+ C FS+ +V+ E++ + R + V S + NF++ + + IG
Sbjct: 373 FSCLFIFSFAQTWAPAAYVIVGESYPIRYRSKCAAVATASNWFWNFMISFFTPFISNSIG 432
Query: 125 LDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
+ +F+ I + KETKG+ L+EI ++Y
Sbjct: 433 FKYGY-VFAACNLCAAIIIFLFAKETKGLTLEEINQLY 469
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 57.6 bits (133), Expect = 2e-09
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 9/217 (4%)
Frame = -2
Query: 635 WKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILALVL 456
W +F R + + +M+ +G YA Q+F K L +VIL +
Sbjct: 254 WIEIFGKDIRYRTCLGFL-VMLFRELIGNNYYFYYATQVF-KGTGMTDIFLPAVILGAIN 311
Query: 455 VASSCVGTFTMDLFKRRSLMICSTLMSSWCM---AVLGS--LLRWSWASDWAVTLVVVIY 291
++ +T+D RR+ +I S C A +G L+ + SD V++++
Sbjct: 312 FGTTFGALYTIDNLGRRNPLIFGAAFQSICFFIYAAVGDRKLIYKNGTSDHRAGSVMIVF 371
Query: 290 -C---FSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGL 123
C FSY + +V+ ETF + R + V + +L NF++ + + IG
Sbjct: 372 SCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCASVATSGNWLGNFMISFFTPFINNAIGF 431
Query: 122 DGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
++++ I + +F KETKG+ L+E+ +Y
Sbjct: 432 K-LGYIYACINLFSSFMIFFLAKETKGLTLEEVNDLY 467
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 56.4 bits (130), Expect = 5e-09
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 9/217 (4%)
Frame = -2
Query: 635 WKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILALVL 456
W +F R + M +IM G Y Q+F K SP L S+IL V
Sbjct: 254 WPEIFGKEIRYRTFLGM-AIMSFNQLTGCNYYFYYGTQVF-KGTGMESPYLASLILDAVN 311
Query: 455 VASSCVGTFTMDLFKRRSLMICSTLMSSWCM---AVLGS--LLRWSWASDWAVTLVVVIY 291
+ G F ++ RR +I + S C A +G+ L R + S+ V++++
Sbjct: 312 FGCTFGGLFVLEYCGRRVPLIIGGVWQSICFFIYAAVGNRALTRKNGTSNHRAGAVMIVF 371
Query: 290 -C---FSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGL 123
C FS+ +V+ E++ + R + V TS +L NFL+ + + IG
Sbjct: 372 SCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAAVATTSNWLWNFLISFFTPFITNSIGF 431
Query: 122 DGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
++F+ I T+ E+KG+ L+EI ++Y
Sbjct: 432 K-YGYIFASCNLCASIVTFLFAHESKGLTLEEINELY 467
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 52.4 bits (120), Expect = 8e-08
Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%)
Frame = -2
Query: 641 SAWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILAL 462
+ W +F R + + +M L G Y ++F N SP L ++IL
Sbjct: 252 ATWPEIFGPDIRYRTFLGL-GVMSLQQLTGDNYYFYYGFEVFEGTGMN-SPYLSALILDA 309
Query: 461 VLVASSCVGTFTMDLFKRRSLMICSTLMSS---WCMAVLGS--LLRWSWASDWAVTLVVV 297
V + G F ++ F RR +I L S + A +G+ L R + S+ V++
Sbjct: 310 VNFGCTFGGLFVLEFFGRRMPLIIGALWQSITFFIYAAVGNRALTRKNGTSNHRAGAVMI 369
Query: 296 IY-C---FSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQI 129
++ C FS+ +V+ E++ + R + V T +L FL+ + + I
Sbjct: 370 VFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAAVATTGNWLWGFLISFFTPFITNSI 429
Query: 128 GLDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMYEKG 3
G ++F+ + ETKG+ L+EI ++Y G
Sbjct: 430 GFK-YGYIFAACNLCAACIIFLFAHETKGLTLEEINELYISG 470
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 51.2 bits (117), Expect = 2e-07
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 9/186 (4%)
Frame = -2
Query: 533 YAAQLFTKMAPNISPDLCSVILALVLVASSCVGTFTMDLFKRRSLMICSTLMSS---WCM 363
Y ++F N SP L ++IL V + G F ++ F RR +I + S +
Sbjct: 287 YGFEVFEGTGMN-SPYLSALILDAVNFGCTFGGLFVLEFFGRRMPLIIGGVWQSITFFIY 345
Query: 362 AVLGS--LLRWSWASDWAVTLVVVIY-C---FSYQVGPNSLPFVLTSETFGPQTRGVASQ 201
A +G+ L R + S+ V++++ C FS+ +V+ E++ + R +
Sbjct: 346 AAVGNRALTRKNGTSNHRAGAVMIVFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAA 405
Query: 200 VVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQ 21
V T +L FL+ + D IG ++F+ + ETKG+ L+EI
Sbjct: 406 VATTGNWLWGFLITFFTPFISDSIGFK-YGYIFAACNLCAACIIFLFAHETKGLTLEEIN 464
Query: 20 KMYEKG 3
++Y G
Sbjct: 465 ELYLSG 470
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 50.8 bits (116), Expect = 2e-07
Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 9/218 (4%)
Frame = -2
Query: 638 AWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILALV 459
+W +F R + M +M L G Y + N SP L ++IL V
Sbjct: 257 SWASIFGKDIRYRTFLGMF-VMSLQQLTGNNYFFYYGFSVMQGAGIN-SPYLSAMILDAV 314
Query: 458 LVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAV---LGSLLRW---SWASDWAVTLVVV 297
+ G + ++ F RR+ +I + S C + +GS + ++ A +++V
Sbjct: 315 NFGCTFGGMYVLERFGRRNPLIIGGIWQSICFFIYSAVGSRALYHKNGTSNTRAGAVMIV 374
Query: 296 IYC-FSYQVGPNSLP--FVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIG 126
+ C F + P +V+ E++ + R + V S +L NFL+ ++ IG
Sbjct: 375 MACLFIFGFAQTWAPAAYVIVGESYPVRYRSKCAAVATASNWLWNFLISFFTPFIQASIG 434
Query: 125 LDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
+ +F+ I + KETKG+ L+EI ++Y
Sbjct: 435 FKYGY-VFASCNLTGAIVIFLFAKETKGLTLEEINELY 471
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 47.6 bits (108), Expect = 2e-06
Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 13/230 (5%)
Frame = -2
Query: 653 QEETSAWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSV 474
Q+ +K L+ + S+ RALI + + G S+ +++ +F + N +P +
Sbjct: 320 QKIVKTFKELYFNPSNFRALILACGLQAMQQLSGFNSLMYFSSTIFEVVGFN-NPTATGL 378
Query: 473 ILALVLVASSCVGTFTMDLFKRRSL-------MICSTLMSSWCMAVLGSLLRWSWASD-- 321
I+A + V +D F RR L MI + ++ + L ++ S
Sbjct: 379 IIAATNFVFTIVAFGVIDFFGRRILLLLTVWGMIAALIVCAVAFHFLPKDENGNYTSGQS 438
Query: 320 --WAVTLVV--VIYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLIL 153
WA+ +++ ++Y SY G +LP+ SE F RG+ + + + N +
Sbjct: 439 NAWAIVVLISMIVYVASYASGLGNLPWQ-QSELFPMSVRGLGTGMSTAVNWAGNLGIGAS 497
Query: 152 FGPVEDQIGLDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMYEKG 3
F + +I GTF L+ + F+ + F + ++EI ++ + G
Sbjct: 498 FLTLMSEITPTGTFALYGGLCFLGWLGALFCYPDLTDYTIEEIGELLKHG 547
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 46.0 bits (104), Expect = 7e-06
Identities = 35/139 (25%), Positives = 59/139 (42%)
Frame = -2
Query: 431 FTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWSWASDWAVTLVVVIYCFSYQVGPNSLPF 252
F +++ R+ + + +++ A+L RW+ S VI GPNS F
Sbjct: 412 FLVEILGRKWIQLQGFVITGLMFAILAG--RWNEISTGGRFACFVIAQLFSNFGPNSTTF 469
Query: 251 VLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFVTVIF 72
+ +E F + RG A V L +LF + IG ++F + ++F
Sbjct: 470 IYPAEVFPARVRGTAHGVSAALGKCGAILASLLFNFLTGVIGYGNVMWIFCGCMWGGILF 529
Query: 71 TYFTMKETKGIPLDEIQKM 15
T + ETKG DEI ++
Sbjct: 530 T-LLLPETKGRDADEIDRL 547
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 45.6 bits (103), Expect = 9e-06
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 10/218 (4%)
Frame = -2
Query: 635 WKLLFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVILALVL 456
W +F + R + M ++M+ G Y Q+F + SP L ++I V
Sbjct: 224 WPEIFNANIRYRTFLGM-AVMMFQQLTGANYYFYYGTQVFRGTGMD-SPYLAALIPDAVN 281
Query: 455 VASSCVGTFTMDLFKRRSLMICSTLMSSWCM---AVLG--SLLRWSWASDWAVTLVVVIY 291
+ F ++ F RRS +I + C A +G +L + S+ V++++
Sbjct: 282 CGCTFGAIFVLEFFGRRSPLIVGGIWQYICFFIYAAVGDRALYHKNGTSNHRAGAVMIVF 341
Query: 290 -C---FSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGL 123
C FS+ +V+ E++ + R + V ++ + NFL+ + + IG
Sbjct: 342 SCLFIFSFSQTWAPAAYVIVGESYPVRYRSKCAAVATSANWFWNFLISFFTPFITNSIGF 401
Query: 122 D-GTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
G F + +IF + + ETKG L+EI MY
Sbjct: 402 KYGYIFASCNLTGAAIIFLF--VHETKGRTLEEINTMY 437
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 45.2 bits (102), Expect = 1e-05
Identities = 34/139 (24%), Positives = 59/139 (42%)
Frame = -2
Query: 431 FTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWSWASDWAVTLVVVIYCFSYQVGPNSLPF 252
F +++ R+ + + +++ A+L RW+ S VI GPNS F
Sbjct: 413 FLVEILGRKWIQLQGFVITGLMFAILAG--RWNEISTGGRFACFVIAQLFSNFGPNSTTF 470
Query: 251 VLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFVTVIF 72
+ +E F + RG A + L +LF + IG ++F + ++F
Sbjct: 471 IYPAEVFPARVRGTAHGISAALGKCGAILASLLFNFLTSIIGYGNVMWIFCGCMWGGILF 530
Query: 71 TYFTMKETKGIPLDEIQKM 15
T + ETKG DEI ++
Sbjct: 531 T-LLLPETKGRDADEIDRV 548
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 37.1 bits (82), Expect = 0.003
Identities = 32/138 (23%), Positives = 53/138 (38%)
Frame = -2
Query: 431 FTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWSWASDWAVTLVVVIYCFSYQVGPNSLPF 252
F ++ R+ + + ++ A+L W S VI F GPN+ F
Sbjct: 401 FLVEKLGRKWIQLQGLFITGLMFAILAG--SWDTISTGGRFACFVIAQFFSNFGPNATTF 458
Query: 251 VLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFVTVIF 72
+ +E F + RG A + L +LF + IG ++F + + F
Sbjct: 459 LYPAEVFPARVRGTAHGLSAALGKCGAILASLLFNFLTSVIGYGNVMWIFCGCMWGAIFF 518
Query: 71 TYFTMKETKGIPLDEIQK 18
T + ETK DEI +
Sbjct: 519 T-LLLPETKMRDADEIDR 535
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 33.5 bits (73), Expect = 0.039
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = -2
Query: 368 CMAVLGSLL-RWSWASDWAVTLVVVIYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVV 192
C + G L W S V + F + GPN+ FV+ +E F + R + +
Sbjct: 440 CCLLFGVLAGTWETISTGGRFACVALAQFFFNFGPNTTCFVIPAEVFPSRVRAFSHGICA 499
Query: 191 TSMFLSNFLLLILFGPVEDQIGLDGTFFLF 102
L +LF + + IG ++F
Sbjct: 500 ACGKAGAILSALLFNKLTEVIGFGNVLWIF 529
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 567 DGLYGDGQRSSVRRTTIHEDGSEYFTRSLLSDFSS 463
D Y DG +VRRT + S+YF + S FS+
Sbjct: 212 DFTYVDGSELTVRRTAYKNNTSKYFVNGVESSFSA 246
>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 251
Score = 29.1 bits (62), Expect = 0.83
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 498 YFTRSLLSDFSSRLGGLQLCRHIHD--GFV*KKESNDLLDAHVVLVH 364
Y+TR L +F + L H HD FV KK+ + +DA V H
Sbjct: 203 YYTRLLFPEFPNVYAFNDLSFHFHDAQSFVEKKQPSKFVDASSVAEH 249
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 350 SLLRWSWASDWAVTLVVVIYCFSYQVGP 267
SLL WS D A+ L IY +S ++GP
Sbjct: 195 SLLSWSPKGDLAIGLAENIYLWSKELGP 222
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 334 DQRSRLPSTAMHQDDMSVEQII-RLLLLNKSIVNVPTQ 444
+++ L A+H D +++E II ++LL+N + N+P++
Sbjct: 342 EEKKVLEEAALH-DKITIEYIISQMLLINAFLENIPSK 378
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 7.7
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = -2
Query: 422 DLFKRRSLMICSTLM--SSWCMAVLGSLLRWSWASDWA-VTLVVVIY-CFSYQVGPNSLP 255
D+++RRSL +L +S + L + S+ A ++L + +Y +SY P+SLP
Sbjct: 125 DMYRRRSLHGLPSLSRRNSKKSSTLSRSISLHLRSESAPISLPIHLYKSYSYNHSPSSLP 184
Query: 254 FVLTSE 237
VL S+
Sbjct: 185 TVLNSQ 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,490,024
Number of Sequences: 5004
Number of extensions: 71426
Number of successful extensions: 227
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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