Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a15
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical ... 64 1e-10
AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical ... 64 1e-10
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 60 1e-09
Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical pr... 58 1e-08
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 57 2e-08
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 56 2e-08
U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical pr... 56 4e-08
Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical pr... 54 2e-07
U41532-1|AAF99904.3| 370|Caenorhabditis elegans Hypothetical pr... 47 1e-05
U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical pr... 39 0.005
AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical ... 39 0.005
AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical ... 39 0.005
Z69787-2|CAA93635.2| 474|Caenorhabditis elegans Hypothetical pr... 35 0.084
Z83123-5|CAB05611.1| 332|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical ... 30 2.4
Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z73422-1|CAA97764.1| 160|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z46933-3|CAA87036.1| 248|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina... 28 7.3
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 9.6
>AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical
protein H17B01.1b protein.
Length = 510
Score = 64.1 bits (149), Expect = 1e-10
Identities = 51/206 (24%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Frame = -2
Query: 593 ISMVSIMVLTVYMGMVSVQVYAAQLFTKMA--PNISPDLCSVILALVLVASSCVGTFTMD 420
+S+ +M+L + ++V ++ + + + A P ++ + V V + + + +D
Sbjct: 305 MSIAIMMMLAQQLSGINVAMFYSTVIFRGAGLTGNEPFYATIGMGAVNVIMTLISVWLVD 364
Query: 419 --LFKRRSLMICS-TLMSSWCMAVLGSLLRWS-----WASDWAVTLVVVIYCFSYQVGPN 264
F RRSL++ T M + ++G+L + WAS A+ V+ ++ S+ GP
Sbjct: 365 HPKFGRRSLLLAGLTGMFVSTLLLVGALTIQNSGGDKWASYSAIGFVL-LFVISFATGPG 423
Query: 263 SLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFV 84
++P+ SE F RG A+ + V + +N L+ + F P+ + + +FF+FS
Sbjct: 424 AIPWFFVSEIFDSSARGNANSIAVMVNWAANLLVGLTFLPINNLMQ-QYSFFIFSGFLAF 482
Query: 83 TVIFTYFTMKETKGIPLDEIQKMYEK 6
+ +T+ + ETKG +++IQ +EK
Sbjct: 483 FIFYTWKFVPETKGKSIEQIQAEFEK 508
>AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical
protein H17B01.1a protein.
Length = 492
Score = 64.1 bits (149), Expect = 1e-10
Identities = 51/206 (24%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Frame = -2
Query: 593 ISMVSIMVLTVYMGMVSVQVYAAQLFTKMA--PNISPDLCSVILALVLVASSCVGTFTMD 420
+S+ +M+L + ++V ++ + + + A P ++ + V V + + + +D
Sbjct: 287 MSIAIMMMLAQQLSGINVAMFYSTVIFRGAGLTGNEPFYATIGMGAVNVIMTLISVWLVD 346
Query: 419 --LFKRRSLMICS-TLMSSWCMAVLGSLLRWS-----WASDWAVTLVVVIYCFSYQVGPN 264
F RRSL++ T M + ++G+L + WAS A+ V+ ++ S+ GP
Sbjct: 347 HPKFGRRSLLLAGLTGMFVSTLLLVGALTIQNSGGDKWASYSAIGFVL-LFVISFATGPG 405
Query: 263 SLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFV 84
++P+ SE F RG A+ + V + +N L+ + F P+ + + +FF+FS
Sbjct: 406 AIPWFFVSEIFDSSARGNANSIAVMVNWAANLLVGLTFLPINNLMQ-QYSFFIFSGFLAF 464
Query: 83 TVIFTYFTMKETKGIPLDEIQKMYEK 6
+ +T+ + ETKG +++IQ +EK
Sbjct: 465 FIFYTWKFVPETKGKSIEQIQAEFEK 490
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 60.5 bits (140), Expect = 1e-09
Identities = 52/201 (25%), Positives = 97/201 (48%), Gaps = 8/201 (3%)
Frame = -2
Query: 596 LISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNISPDLCSVIL--ALVLVAS-SCVGTFT 426
+I + +M + G+ +V Y+ +F + + + + + + + L+A+ C+
Sbjct: 307 MIVSILMMFSQQFSGISAVTFYSTLIFKRNGLSGNEPMYATVGFGCIKLIATFGCLFLID 366
Query: 425 MDLFKRRSLMIC--STLMSSWCMAVLGSLLR---WSWASDWAVTLVVVIYCFSYQVGPNS 261
F R+ L I S + S + V+ L + WAS V L ++ + ++ GP
Sbjct: 367 HPKFGRKRLHIAGLSGMCISSILIVITLTLSNAGYHWASYMNV-LFILSFVVTFAFGPGP 425
Query: 260 LPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFVT 81
+P+ TSE F TRG A+ V TS +++N+++ + F P+ + I F +F+ F
Sbjct: 426 IPWFFTSELFDSATRGRAAAVSATSNWVANWMVGLTFLPINNIIH-QYAFLMFTFFTFTF 484
Query: 80 VIFTYFTMKETKGIPLDEIQK 18
IFT+ + ETKG I+K
Sbjct: 485 AIFTWKFVPETKGKSPSAIRK 505
>Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical
protein K08F9.1 protein.
Length = 490
Score = 60.1 bits (139), Expect = 2e-09
Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 7/206 (3%)
Frame = -2
Query: 602 RALISMVSIMVLTVYMGMVSVQVYAAQLFTKMAPNI-SPDLCSVILALVLVASSCVGTFT 426
+A + V V++ + G+ + +A ++ N+ L + +V V SS +
Sbjct: 268 KAFVGAVVTFVMS-FSGVAVISAFAFEILVNTGLNVLQASLANDATTIVSVISSVLAIAI 326
Query: 425 MDLFKRRSLMICSTLMSSWC-MAVLGSLLRWSWASDWAVTLVVV----IYCFSYQVGPNS 261
+D RR L++ S C + + G + + + + +++ I+ F + +GP
Sbjct: 327 IDKNGRRPLLLISLAGILICNLIIFGLMFTFDKFGNQVLGFILIFFICIFQFFFALGPGP 386
Query: 260 LPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGF-V 84
L + + +E G R A +S F ++ F P+++Q+G ++ + + V
Sbjct: 387 LSYFINAELVGQDARSAAQSWASVVQMISQFSIITAFLPMKNQLGEAWSYLILFVAPVAV 446
Query: 83 TVIFTYFTMKETKGIPLDEIQKMYEK 6
+++F YF++ ETK E+++ E+
Sbjct: 447 SLVFLYFSLPETKNKSPIEVEEAIEE 472
>Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical
protein M01F1.5 protein.
Length = 604
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/99 (27%), Positives = 51/99 (51%)
Frame = -2
Query: 308 LVVVIYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQI 129
+++V Y S+ G LP+VL +E + R A V ++ N ++ + F +
Sbjct: 473 IIMVFYLLSFSAGYAPLPWVLNAEFYPLWARSTAVSVSTACNWIFNLIVSLTFLSLSQAA 532
Query: 128 GLDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
GTFF++ V ++F +F + ETKG +DE++ ++
Sbjct: 533 TKYGTFFIYCGCTMVALVFVFFFVPETKGYSIDEVEMLF 571
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/95 (27%), Positives = 49/95 (51%)
Frame = -2
Query: 296 IYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDG 117
+Y ++ G SLP+VL SE + R + S ++ N ++ + + + I G
Sbjct: 481 VYLLTFSCGFTSLPWVLNSEFYPMWARSTCVSISTLSNWVFNLIIALTYLSLTHAITKYG 540
Query: 116 TFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
F+L++I + IF YF + ET G +DE++ ++
Sbjct: 541 AFWLYAIFTIIAFIFIYFLVPETTGYSIDEVEMLF 575
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/95 (27%), Positives = 51/95 (53%)
Frame = -2
Query: 296 IYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDG 117
+Y ++ G SLP+VL SE + R + TS ++ N ++ + + + IG G
Sbjct: 473 VYLLTFSSGFTSLPWVLNSEFYPMWARSTCVAISTTSNWVFNLIIALTYLSLTQVIGKYG 532
Query: 116 TFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMY 12
F+L++ + + IF F + ETKG ++E++ ++
Sbjct: 533 AFWLYAGLTVIAFIFILFLVPETKGYSIEEVEMLF 567
>U41023-1|AAA82340.1| 569|Caenorhabditis elegans Hypothetical
protein F53H8.3 protein.
Length = 569
Score = 55.6 bits (128), Expect = 4e-08
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 7/208 (3%)
Frame = -2
Query: 626 LFASTSSRRALISMVSIMVLTVYMGMVSVQVYAAQLFTK--MAPNISPDLCSVILALVLV 453
LF R L + +M+ + G +V ++ +F + P I+ ++ + +V
Sbjct: 314 LFTRPDLRIPLAVSIIVMIAQQFTGCTAVFAFSTDMFLNAGLTPVIAR-FSTLAIGIVYF 372
Query: 452 ASSCVGTFTMDLFKRR--SLMICSTLMSSWCMAVLGSLLRWSWASDWA---VTLVVVIYC 288
+C F + RR SL ++ M + + L + L+ +WA +V Y
Sbjct: 373 LFACTSPFLIHKVGRRWLSLFQLASCMVALMLLSLFTFLQNYENIEWARYGTIFSLVFYM 432
Query: 287 FSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFF 108
Y VG + +P+++ SE F Q R A V V + F++ + P + +G+ ++F
Sbjct: 433 CVYGVG-SPIPWIIASELFTQQFRATAVTVSVFVAWTFAFIVSTSYLPFQQLVGITFSYF 491
Query: 107 LFSIIGFVTVIFTYFTMKETKGIPLDEI 24
F I V IF Y + ET+ P+ EI
Sbjct: 492 PFIIGLAVFGIFIYVLLPETRDRPMVEI 519
>Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical
protein Y37A1A.3 protein.
Length = 500
Score = 53.6 bits (123), Expect = 2e-07
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 10/200 (5%)
Frame = -2
Query: 575 MVLTVYMGMVSVQVYAAQLFT-KMAPNISPDLCSVILALVLV---ASSCVGTFTMDLFKR 408
M++T M M + V A F M + D ++ A + A V T +D F R
Sbjct: 297 MMVTFSMAMSGITVINAFAFEILMNVGMKQDTAAIANAAICFFSFAGILVSTKIIDHFGR 356
Query: 407 RSLMICST-LMSSWCMAVLGSLLRWSWASDWAVTLVVV----IYCFSYQVGPNSLPFVLT 243
R L+I + ++ + ++G + ++ + V+ ++ ++ F + +GP L +T
Sbjct: 357 RPLLISTFGCLAVVNVVIVGLMYTFAETQNQIVSYFLISAICMFNFLFAMGPGPLSMFIT 416
Query: 242 SETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIG-FVTVIFTY 66
E R +S M + FL+L + PV++ + +F ++ V V+ +
Sbjct: 417 GELVPQNCRSASSVWTNAVMAVVRFLILTFYLPVKNMTSEFMAYAIFFVVPMIVAVLVIF 476
Query: 65 FTMKETKGIPLDEIQKMYEK 6
F + ETKG ++EI++ YE+
Sbjct: 477 FLLPETKGRNVEEIREEYER 496
>U41532-1|AAF99904.3| 370|Caenorhabditis elegans Hypothetical
protein F11D5.5 protein.
Length = 370
Score = 47.2 bits (107), Expect = 1e-05
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 6/164 (3%)
Frame = -2
Query: 479 SVILALVLVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGSL------LRWSWASDW 318
++I+ + + + GTF D RR + + + L+ + ++ SL SW +
Sbjct: 158 NLIITIFSLPTKFFGTFLSDSIGRRPIFVIAALLQYFRTCIIFSLEITIYIFGSSWLTRI 217
Query: 317 AVTLVVVIYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFGPVE 138
+V + G NSL +LT E F P R V Q + + L F +L F P+
Sbjct: 218 TYNMVEFLAALVSATGVNSLRLLLTMELFPPSARTVIGQTQMIASILIGFPILSSF-PII 276
Query: 137 DQIGLDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKMYEK 6
+ + F F I + I+ + M ET+G + +I + +K
Sbjct: 277 NTMFPPIFFVPFVITQLLLGIYLFRHMPETRGRAVYDIIESLDK 320
>U40952-1|AAK68681.3| 436|Caenorhabditis elegans Hypothetical
protein C03B1.13 protein.
Length = 436
Score = 43.6 bits (98), Expect = 2e-04
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Frame = -2
Query: 470 LALVLVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWSWASDWAVTLVVVIY 291
L LVL +S G + D F RR L++ + C+A +G+++ + V+V
Sbjct: 261 LGLVLFFASLFGIYLADRFGRRKLVLVG--LFGTCVANIGAVV-------FTTNKVIVSL 311
Query: 290 CFSYQ-----VGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLLLILFG-PVEDQI 129
CF+ +G + LTSE P+ + Q + T + LS ++ F V++ +
Sbjct: 312 CFAATKTFIGIGCGGPAWFLTSELVDPEYAWIF-QPLSTGILLSTTMIETFFYLTVDNLV 370
Query: 128 GLDGTFFLFSIIGFVTVIFTYFTMKETKGIPLDEIQKM 15
G L + V I Y + ETKG +EIQ M
Sbjct: 371 GGYSLLILAAGPALVAAILIYLYLPETKGRSSEEIQNM 408
>Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = -2
Query: 641 SAWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQ-----VYAAQLFTKMAPNISPDLCS 477
+A LL AS + + S ++++L V G VSV Y ++LF + N + CS
Sbjct: 414 TAGMLLLASWLTHDLIPSQYAVIMLMVAKGAVSVAYTVMYTYTSELFPTVIRNTAVGCCS 473
Query: 476 VILALVLVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWS 333
I +++S + F +D F R ++I T+ +A+ S++ W+
Sbjct: 474 TIARFGAISASFIAFFLVDRFGRIVMIIPFTI-----LALCASIVSWT 516
>Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = -2
Query: 641 SAWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQ-----VYAAQLFTKMAPNISPDLCS 477
+A LL AS + + S ++++L V G VSV Y ++LF + N + CS
Sbjct: 380 TAGMLLLASWLTHDLIPSQYAVIMLMVAKGAVSVAYTVMYTYTSELFPTVIRNTAVGCCS 439
Query: 476 VILALVLVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWS 333
I +++S + F +D F R ++I T+ +A+ S++ W+
Sbjct: 440 TIARFGAISASFIAFFLVDRFGRIVMIIPFTI-----LALCASIVSWT 482
>AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = -2
Query: 641 SAWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQ-----VYAAQLFTKMAPNISPDLCS 477
+A LL AS + + S ++++L V G VSV Y ++LF + N + CS
Sbjct: 414 TAGMLLLASWLTHDLIPSQYAVIMLMVAKGAVSVAYTVMYTYTSELFPTVIRNTAVGCCS 473
Query: 476 VILALVLVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWS 333
I +++S + F +D F R ++I T+ +A+ S++ W+
Sbjct: 474 TIARFGAISASFIAFFLVDRFGRIVMIIPFTI-----LALCASIVSWT 516
>AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Frame = -2
Query: 641 SAWKLLFASTSSRRALISMVSIMVLTVYMGMVSVQ-----VYAAQLFTKMAPNISPDLCS 477
+A LL AS + + S ++++L V G VSV Y ++LF + N + CS
Sbjct: 380 TAGMLLLASWLTHDLIPSQYAVIMLMVAKGAVSVAYTVMYTYTSELFPTVIRNTAVGCCS 439
Query: 476 VILALVLVASSCVGTFTMDLFKRRSLMICSTLMSSWCMAVLGSLLRWS 333
I +++S + F +D F R ++I T+ +A+ S++ W+
Sbjct: 440 TIARFGAISASFIAFFLVDRFGRIVMIIPFTI-----LALCASIVSWT 482
>Z69787-2|CAA93635.2| 474|Caenorhabditis elegans Hypothetical
protein C44C10.3 protein.
Length = 474
Score = 34.7 bits (76), Expect = 0.084
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 4/190 (2%)
Frame = -2
Query: 578 IMVLTVYMGMVSVQVYAAQLFTK-MAPNISPDLCSVILALVLVASSCVGTFT---MDLFK 411
+ VL + V+V +A L + +A N+ L + ++LV S V F + FK
Sbjct: 275 LFVLWIMWFFVAVCGFANDLNSNSLAGNLY--LNQALFGILLVLSKIVLLFVDTKFENFK 332
Query: 410 RRSLMICSTLMSSWCMAVLGSLLRWSWASDWAVTLVVVIYCFSYQVGPNSLPFVLTSETF 231
RR+L S +L L W D+ T +++Y F + V
Sbjct: 333 RRTLHQGSQSGMIISFLILAIFL---WI-DYHGTGFLIVYLFGTMFIEYTWDAVYLCAIE 388
Query: 230 GPQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSIIGFVTVIFTYFTMKE 51
+T AS V S+ LL F + +F ++G V +I ++ ++E
Sbjct: 389 SMETSSRASAVGSCSLMARIGSLLAPFLTYANTWWPPAVYFTIIVLGTVNLIISFMFLQE 448
Query: 50 TKGIPLDEIQ 21
TK + LDE+Q
Sbjct: 449 TKNVNLDEVQ 458
>Z83123-5|CAB05611.1| 332|Caenorhabditis elegans Hypothetical
protein T04A11.8 protein.
Length = 332
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = -2
Query: 551 MVSVQVYAAQLFTKMAPNISPDLCSVILALVLVASSCVGTFTMDLFKRRSLMICSTLMSS 372
++ +++ L T + SP SV + LVL S +G F DLF R + S +M+S
Sbjct: 43 VIIFRIFRIFLNTVLWKKKSPINHSVFIVLVLSQISSLGFFLADLFVIR--IPPSGIMTS 100
Query: 371 WC 366
WC
Sbjct: 101 WC 102
>AF047658-5|AAC04416.3| 434|Caenorhabditis elegans Hypothetical
protein K03H6.5 protein.
Length = 434
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 311 TLVVVIYCFSYQVGPNSLPFVLTSETFGPQTRGVASQVVVTSMFLSNFLL-LILF 150
T++ ++ CF+ GP+++ F+ + + F P + VV + L+ +L ++LF
Sbjct: 279 TVLAIVSCFTLTQGPSAIVFI-SQKMFPPNQYSIYISVVANQLVLTGKMLNVVLF 332
>Z78418-4|CAB01698.1| 710|Caenorhabditis elegans Hypothetical
protein F25D7.5 protein.
Length = 710
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = -2
Query: 410 RRSLMIC----STLMSSWCMAVLGSLLRWSWASDWAVTLVVVIY-CFSYQVG 270
RR+ ++C S L ++W + +L + R W +TLV +IY FS+ G
Sbjct: 439 RRNTVLCFIGVSLLSATWLLTILAADKRSKGIYGWVLTLVGIIYGVFSFVQG 490
>Z73422-1|CAA97764.1| 160|Caenorhabditis elegans Hypothetical
protein B0564.2 protein.
Length = 160
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2
Query: 227 PQTRGVASQVVVTSMFLSNFLLLILFGPVEDQIGLDGTFFLFSII 93
P T G A +VT++ L + LL ++ PV+ ++ L +LF+ I
Sbjct: 113 PHTDGPAFHRIVTTVTLGSHCLLDMYDPVDQEVNLR---YLFTFI 154
>Z46933-3|CAA87036.1| 248|Caenorhabditis elegans Hypothetical
protein F34H10.3 protein.
Length = 248
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 837 GKGSVTLLSVLSRRVSRYGTRLGRALVHAQ 748
GK SVT L++ R+VS + +RL H Q
Sbjct: 188 GKESVTYLTLFGRQVSDFKSRLNEITTHEQ 217
>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
protein K03H1.2 protein.
Length = 1131
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 282 AETINNDDERHRPVRSPRPAQQTAKHGHA-PGRH--ERRADH*TPSFKQIHRECADTAGG 452
+E N DDE+ R R P + ++ K A P H E RA K + RE D G
Sbjct: 181 SERRNRDDEKRRRHRKPEDSVRSVKEEKAEPTFHDDEERAQW-EEEQKNLDREWYDNEGA 239
Query: 453 HQDE 464
DE
Sbjct: 240 FDDE 243
>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
determination protein MOG-1 protein.
Length = 1131
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +3
Query: 282 AETINNDDERHRPVRSPRPAQQTAKHGHA-PGRH--ERRADH*TPSFKQIHRECADTAGG 452
+E N DDE+ R R P + ++ K A P H E RA K + RE D G
Sbjct: 181 SERRNRDDEKRRRHRKPEDSVRSVKEEKAEPTFHDDEERAQW-EEEQKNLDREWYDNEGA 239
Query: 453 HQDE 464
DE
Sbjct: 240 FDDE 243
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/95 (25%), Positives = 29/95 (30%), Gaps = 1/95 (1%)
Frame = +3
Query: 312 HRPVRSPRPAQQTAKHGHAPGRHERRADH*TPSFKQIHRECADTAGGHQDES*NH*AEIW 491
H SP +H HAP H H + H E + G H H E
Sbjct: 552 HGSHHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHE-SHGHGHHAPAHHGHHGEHG 610
Query: 492 *NIRSH-LRE*LCGVHLNADHPHIDRQDHDRHHAD 593
+ H H A H H +H HH D
Sbjct: 611 VHHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGD 645
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,622,984
Number of Sequences: 27780
Number of extensions: 416480
Number of successful extensions: 1231
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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