Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a14
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.8  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   5.0  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.6  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.7  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   8.7  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 25/100 (25%), Positives = 40/100 (40%)
 Frame = -2

Query: 749 SSSQCTVKDSQT*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRS 570
           +S+ CT   S     +    +P T     +S +  S+  P   T +T +  S   T S S
Sbjct: 225 TSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284

Query: 569 ETVQTAPRVTGSSMRKKAKGKSPTTALKNPT*PSRSATKT 450
            T  T+   TG+S         PT+     T P  ++T +
Sbjct: 285 CTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 597 VRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGKLNP 418
           V+  YG          EG+  +  KEG  +++ +   + +      D     L++  +  
Sbjct: 580 VKNTYGLNFTINLKAVEGFRTVELKEGGSELSVDNENRKEYVLRYVDY----LLNTTVKK 635

Query: 417 Q-KAFFQGKIKIQGNMGLAM 361
           Q  AFF G +K+ G   +++
Sbjct: 636 QFSAFFDGFMKVCGGNAISL 655


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -1

Query: 477 VTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQAAG-RIETIRSKL 301
           +T  +SD++V D+I    +PQ A     I+   N+G    +T L  +  G +  TI    
Sbjct: 310 ITDVVSDDEVVDIIKLSESPQDA-ANNIIRYAQNVGAVDDITCLVVRLPGWKKRTINDF- 367

Query: 300 *TEQVRGSELVAYQPRDS 247
            T+ +R  E  AY PR S
Sbjct: 368 -TKNLR-LEKSAYHPRRS 383


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 641 LKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSS 531
           + R  KPT TT S   A +T   + T  T+P    SS
Sbjct: 345 ISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSS 381


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -1

Query: 681 NPEGFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEG 544
           NP G K FK + +  E +   Q   +    GI        P GAEG
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQYGITEGNAAPPPPGAEG 83


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 527 RKKAKGKSPTTALKNPT*PSRSATKTWPIL 438
           R+K  G S TTA   P  PS+ +++  P+L
Sbjct: 232 RRKDSGSSKTTATYIPHNPSKKSSQHLPLL 261


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 293 SRSADLSWSRTSHEIVIRKGY 231
           S+  +++WS+TS+EIV   G+
Sbjct: 336 SQVCNMAWSKTSNEIVTTHGF 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,278
Number of Sequences: 5004
Number of extensions: 57933
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)