Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a14
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720... 62 5e-10
01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371... 60 2e-09
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570... 46 3e-05
03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684 31 0.98
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 29 5.2
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 29 5.2
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 6.9
11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711 28 9.1
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 28 9.1
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396... 28 9.1
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 28 9.1
>02_05_0855 -
32271631-32271712,32271823-32271922,32272012-32272072,
32272169-32272294
Length = 122
Score = 62.1 bits (144), Expect = 5e-10
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = -1
Query: 609 LIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVADLI 436
L+EK+ +Y + E +V++ K+G K Y G KPD TF+ +D+D +
Sbjct: 27 LVEKIGFVYQLNISPKKLAFDEEVFVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAIS 84
Query: 435 SGKLNPQKAFFQGKIKIQGNMGLAMKLT 352
SGKLNPQ AF GK+KI+G++ A K T
Sbjct: 85 SGKLNPQMAFIMGKLKIKGSISAAQKFT 112
>01_03_0268 +
14436631-14436756,14436866-14436929,14437001-14437100,
14437187-14437478
Length = 193
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Frame = -1
Query: 609 LIEKVRGIYGFKVRNGPDG--AEGYWVINAKEGK-GKVTYNGSEKPDVTFTISDEDVADL 439
L+E + +Y + G E + V++ K+G K Y G KPD TF+ +D+D +
Sbjct: 27 LVEMIGFVYQLNISPKKLGFDEEVFIVVDLKKGVVSKGPYEG--KPDATFSFTDDDFLAI 84
Query: 438 ISGKLNPQKAFFQGKIKIQGNMGLAMKLT 352
SGKLNPQ F GK+KI+G++ A K T
Sbjct: 85 SSGKLNPQMVFIMGKLKIKGSISAAQKFT 113
>06_01_0762 +
5699619-5699744,5699831-5699891,5699979-5700078,
5700436-5700560,5700631-5700706,5701122-5701164
Length = 176
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Frame = -1
Query: 630 MQTDQD-NLIEKVRGIYGFKVRNGPDGA-EGYWVINAKEGK-GKVTYNGSEKPDVTFTIS 460
M TD ++ +KV +Y F + G E +V++ K+G+ K Y G KPD TF+ +
Sbjct: 19 MATDAGKDIAKKVGLVYQFNIAPKKIGVDEEIFVVDLKKGEVTKGPYEG--KPDATFSFT 76
Query: 459 DEDVADLISGKLNPQKAFFQ 400
D D + +GK+NPQ AF +
Sbjct: 77 DSDFLSIATGKMNPQIAFIR 96
>03_01_0546 - 4089502-4089661,4089959-4090025,4091243-4091684
Length = 222
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 591 GIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGK 427
G+ G K+ A W +A++G G+ Y GS PD F D D ++ K
Sbjct: 103 GLAGLKMARAASTASR-WRASAEQGSGEDDYGGSVVPDAGFLGGGRDGGDFVNLK 156
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 28.7 bits (61), Expect = 5.2
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Frame = -1
Query: 738 MYRKGFSNVTPNNVAAVADN---PEGFKVFKYM------KILEEAMQTDQDNLIEKVRGI 586
M + G ++V NV V PE K F+ M + L MQT + L++K
Sbjct: 19 MLKLGLTDVNEGNVVPVDPEKFTPEQKKEFEAMLQQAQDQFLNSFMQTRKGTLVQK---- 74
Query: 585 YGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDV 475
Y KV G ++K+G GK NGS +P +
Sbjct: 75 YKIKVVADDPGTS-----SSKDGDGKQAPNGSAQPSI 106
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = -2
Query: 692 PSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQ-TAPRVTGSSMRKKA 516
P P K +S R KPT T +K S + E Q +AP T S K+A
Sbjct: 87 PKPRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQQASAPMSTPSKKNKEA 146
Query: 515 KGKSPTTALKNPT 477
K + PT
Sbjct: 147 KRDTGGAGKPTPT 159
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 657 KYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAE 547
+Y K L E++ + + KV G+Y RN DG E
Sbjct: 1367 EYFKYLTESVSSGSPTCLAKVLGLYQVAARNLRDGKE 1403
>11_04_0143 + 14034141-14034257,14034349-14034594,14034797-14035711
Length = 425
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 342 RQAAGRIETIRSKL*TEQVRGSELVAYQPRDSYTERLRN 226
R+ GR+ + SKL ++ + +Y+ RD+Y E LR+
Sbjct: 264 REHGGRVRGVSSKLSWKEGFKQDASSYKRRDAYKESLRD 302
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRV 543
PP P KA + +RPC P+ + S+ S+ S + APRV
Sbjct: 21 PPPPPPAKAAAAE-----AERPCPPSSAATTSSSSSSSASAAPAAAGAPRV 66
>03_01_0527 +
3960982-3961290,3961371-3961464,3961898-3962084,
3962194-3962449,3962561-3962773,3962856-3962942,
3963089-3963223,3963296-3963409,3963507-3963754,
3963824-3963904,3963979-3964210,3964340-3964438,
3964513-3964701,3964928-3965023
Length = 779
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 425 SFPDIRSATSSSLIVKVTSGFSEPL*VTFPLPS 523
+ PD+++ +SSS+ VKV + PL + LP+
Sbjct: 313 NLPDLKNISSSSINVKVVAKKKRPLIYVYDLPA 345
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +2
Query: 344 CKSVSFIASPMLPWILIFPW-KNAF*GFS----FPDIRSATSSSLIVKVTSGFSEPL 499
C +V F+ + ++ I+IF W KN S F + SS ++KVT G PL
Sbjct: 430 CMTVMFVTTFLMALIMIFVWQKNIIFALSFFLLFGSVEVVYLSSSLMKVTQGGWVPL 486
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,476,827
Number of Sequences: 37544
Number of extensions: 376687
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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