Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a14
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical p... 63 2e-10
U28739-13|AAK68187.1| 418|Caenorhabditis elegans Dehydrogenases... 58 9e-09
U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,... 56 3e-08
U42013-1|AAB06496.1| 415|Caenorhabditis elegans UNC-24 protein. 38 0.006
AF045644-5|AAC02604.1| 415|Caenorhabditis elegans Uncoordinated... 38 0.006
Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 36 0.041
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 34 0.094
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co... 32 0.38
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 30 1.5
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 30 2.0
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 30 2.0
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 30 2.0
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 2.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 2.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 2.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 2.7
>Z48638-10|CAA88566.1| 118|Caenorhabditis elegans Hypothetical
protein ZK892.2 protein.
Length = 118
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/105 (32%), Positives = 57/105 (54%)
Frame = -1
Query: 669 FKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGS 490
FK + ++E + TD++ +++KV + + G DG W I+AK V + S
Sbjct: 3 FKSDVIFEEIKERIATDKE-MVKKVGTSFRMTIA-GADGKTKVWTIDAKSDTPYVGDDSS 60
Query: 489 EKPDVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKL 355
++ I D D + +GK+ P +AF QGK+K++GN+ AMKL
Sbjct: 61 RPVEIEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKL 105
>U28739-13|AAK68187.1| 418|Caenorhabditis elegans Dehydrogenases,
short chain protein6 protein.
Length = 418
Score = 57.6 bits (133), Expect = 9e-09
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = -1
Query: 648 KILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEGYWVINAKEGKGKVT-YNGSEKPDVT 472
+I A + ++++K +Y F +++ +E ++ K G+G +T S K DV
Sbjct: 308 QIFTSAKRLLNADIVKKTGFVYEFLLKDPTTKSERIITLDLKNGEGALTDKKASGKADVK 367
Query: 471 FTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQ 337
FT++ E A L +GKL P A K++I G+M AMKL L R+
Sbjct: 368 FTLAPEHFAPLFTGKLRPTTALMTKKLQISGDMPGAMKLESLLRK 412
>U41544-2|AAA83184.1| 436|Caenorhabditis elegans Dehydrogenases,
short chain protein28 protein.
Length = 436
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = -1
Query: 498 NGSEKPDVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKLTDLQRQA 334
NG EK + T T++D D D+ +GKLN QKAF GK+K++GN+ L KL + +A
Sbjct: 378 NG-EKANATVTVADSDFVDIAAGKLNAQKAFMSGKLKVKGNVMLLQKLQTVLEKA 431
>U42013-1|AAB06496.1| 415|Caenorhabditis elegans UNC-24 protein.
Length = 415
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -1
Query: 534 INAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKL 355
I+ K G G S PDV F S E +++ +++P + G +K++G++ AM+L
Sbjct: 345 IDLKHGSGSAYKGTSLNPDVVFETSLEVFGKILTKEVSPVTVYMNGNLKVKGSIQDAMQL 404
Query: 354 TDL 346
L
Sbjct: 405 KHL 407
>AF045644-5|AAC02604.1| 415|Caenorhabditis elegans Uncoordinated
protein 24 protein.
Length = 415
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -1
Query: 534 INAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGKLNPQKAFFQGKIKIQGNMGLAMKL 355
I+ K G G S PDV F S E +++ +++P + G +K++G++ AM+L
Sbjct: 345 IDLKHGSGSAYKGTSLNPDVVFETSLEVFGKILTKEVSPVTVYMNGNLKVKGSIQDAMQL 404
Query: 354 TDL 346
L
Sbjct: 405 KHL 407
>Z92838-5|CAB07404.2| 578|Caenorhabditis elegans Hypothetical
protein T03D8.6 protein.
Length = 578
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -1
Query: 585 YGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGKLNPQKAF 406
YGFK P GYW I K G GKVT+ +P V V+ ++ + ++
Sbjct: 125 YGFKAAGTPGEIAGYWHIFKKFGSGKVTWKELVQPSVKLAREGHPVSPYLATVMKVKERH 184
Query: 405 FQ 400
F+
Sbjct: 185 FR 186
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 35.5 bits (78), Expect = 0.041
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = -2
Query: 695 PPSPTTRKALRS--SNT*RSLKRPCKPTRT---T*SRKSAGSTVSRSETVQTAPRVTGSS 531
P SPTT S S T L +P + T T T S S ++ S S + T+ + S+
Sbjct: 60 PKSPTTTSISTSTVSTTPERLTKPYEETDTPIPTHSSPSTSTSTSTSTSTSTSTSRSTST 119
Query: 530 MRKKAKGKSPTTALKNPT*PSRSATKTWPILYP 432
+ + + TTA PT S++ T + I P
Sbjct: 120 VTPTTRSSTTTTATSTPTSSSKATTTSAQITQP 152
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.094
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKR--PCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRK 522
P +PTT K+ ++ T + + P PT T + KS +T + T+++ P +
Sbjct: 224 PTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT-TMKSTPTTPTTPTTMKSTPTTPTTPTTM 282
Query: 521 KAKGKSPTTALKNPT*PSRSAT 456
K+ +PTT PT P+ T
Sbjct: 283 KSTPTTPTTMKSTPTTPTTPTT 304
Score = 34.3 bits (75), Expect = 0.094
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKR--PCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRK 522
P +PTT K+ ++ T + + P PT T + KS +T + T+++ P +
Sbjct: 338 PTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT-TMKSTPTTPTTPTTMKSTPTTPTTPTTM 396
Query: 521 KAKGKSPTTALKNPT*PSRSAT 456
K+ +PTT PT P+ T
Sbjct: 397 KSTPTTPTTMKSTPTTPTTPTT 418
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSA-GSTVSRSETVQTAPRVTGSSMRKK 519
P +PTT ++S+ T + K T TT + + ST + T+++ P + K
Sbjct: 361 PTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTPTTMKSTPTTPTTMKSTPTTPTTPTTMK 420
Query: 518 AKGKSPTTALKNPT*PS 468
+ +PTT PT PS
Sbjct: 421 STPTTPTTMKSTPTTPS 437
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKR--PCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRK 522
P +PTT K+ ++ T + + P PT T + KS +T + T+++ P +
Sbjct: 237 PTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT-TMKSTPTTPTTPTTMKSTPTTPTTMKST 295
Query: 521 KAKGKSPTTALKNPT*PSRSAT 456
+PTT PT P+ T
Sbjct: 296 PTTPTTPTTMKSTPTTPTTPTT 317
Score = 31.5 bits (68), Expect = 0.66
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKR--PCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRK 522
P +PTT K+ ++ T + + P PT T + KS +T + T+++ P +
Sbjct: 351 PTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT-TMKSTPTTPTTPTTMKSTPTTPTTMKST 409
Query: 521 KAKGKSPTTALKNPT*P-SRSATKTWP 444
+PTT PT P + +T T P
Sbjct: 410 PTTPTTPTTMKSTPTTPTTMKSTPTTP 436
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKR--PCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRK 522
P +PTT K+ ++ T + + P PT T + KS +T + ++ T P +
Sbjct: 250 PTTPTTMKSTPTTPTTPTTMKSTPTTPTTPT-TMKSTPTTPTTMKSTPTTPTTPTTMKST 308
Query: 521 KAKGKSPTTALKNPT*PSRSAT 456
+PTT PT P+ T
Sbjct: 309 PTTPTTPTTMKSTPTTPTTPTT 330
>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
protein protein12 protein.
Length = 1847
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = -1
Query: 552 AEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGKLNPQ---KAFFQGKIKIQ 382
A+G+ + N KEG +T PD + V+ + S ++P K+ F+ I
Sbjct: 1249 ADGHLITNGKEGSAAITVRNVNSPDNETVLIPVTVSRVASLDVHPTIELKSAFENSPLIH 1308
Query: 381 GNMGLAMKLTDLQRQAAGR 325
+G ++L + R A GR
Sbjct: 1309 LPVGAQIQLNVVPRDARGR 1327
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -2
Query: 722 SQT*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPT--RTT*SRKSAGSTVSRSETVQTAP 549
S + RRT+ P P T ++ + + + + P +PT + SRK S V R ++
Sbjct: 325 SSSSRRTVTPKRPQTNDSVSTRRSSTTWEVPIRPTTMNSQISRKRTPSPVVRKAPSSSSS 384
Query: 548 RVTGSSMRKKA 516
T SS R+++
Sbjct: 385 NSTSSSSRRRS 395
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 55 FIKTNTYGNEFSLPIYYTFKFEREYFVIYLFFSYIKNKN--TYHLTEYV 195
++K + N + PIY++F+ +R + + LFF++ +N N HL+E V
Sbjct: 922 YLKFDDVKNVLNAPIYFSFRTDRTHAL--LFFAHDQNNNFLQVHLSEEV 968
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -2
Query: 692 PSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRS-ETVQTAPRVTGSSMRKKA 516
P+ + RKA +S R+ P+R+ + G T S++ +T P + R ++
Sbjct: 34 PAKSARKASKSPARARTSNVKKTPSRSASKSATRGRTASKTPKTPSKTPSSASARSRSRS 93
Query: 515 KGKSPTTALKNPT*PSRSAT 456
+G+ + + + PS S+T
Sbjct: 94 RGRPTNASRLSASTPSASST 113
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = -2
Query: 704 TMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMR 525
T P + TT + ++T + KPT +T + S +T + S T T P+ T ++
Sbjct: 594 TQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTS 653
Query: 524 KKAKGKSPTTALKNPT*P-SRSATKTWPILYP 432
+K + T PT R+ +T P P
Sbjct: 654 EKPVTLTTQTWTAPPTTTVKRTTPQTVPTTTP 685
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = -2
Query: 704 TMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMR 525
T P + TT + ++T + KPT +T + S +T + S T T P+ T ++
Sbjct: 594 TQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTS 653
Query: 524 KKAKGKSPTTALKNPT*P-SRSATKTWPILYP 432
+K + T PT R+ +T P P
Sbjct: 654 EKPVTLTTQTWTAPPTTTVKRTTPQTVPTTTP 685
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKA 516
P SPT ++ S +K P K KS S + ++ + + TG +++K+
Sbjct: 1412 PASPTKKE---KSPAAEEVKSPTK------KEKSPSSPTKKEKSPSSPTKKTGDEVKEKS 1462
Query: 515 KGKSPTTALKNPT*P 471
KSPT K+P P
Sbjct: 1463 PPKSPTKKEKSPEKP 1477
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKA 516
P SPT ++ S +K P K KS S + ++ + + TG +++K+
Sbjct: 1412 PASPTKKE---KSPAAEEVKSPTK------KEKSPSSPTKKEKSPSSPTKKTGDEVKEKS 1462
Query: 515 KGKSPTTALKNPT*P 471
KSPT K+P P
Sbjct: 1463 PPKSPTKKEKSPEKP 1477
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKA 516
P SPT ++ S +K P K KS S + ++ + + TG +++K+
Sbjct: 1412 PASPTKKE---KSPAAEEVKSPTK------KEKSPSSPTKKEKSPSSPTKKTGDEVKEKS 1462
Query: 515 KGKSPTTALKNPT*P 471
KSPT K+P P
Sbjct: 1463 PPKSPTKKEKSPEKP 1477
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = -2
Query: 695 PPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRSETVQTAPRVTGSSMRKKA 516
P SPT ++ S +K P K KS S + ++ + + TG +++K+
Sbjct: 1412 PASPTKKE---KSPAAEEVKSPTK------KEKSPSSPTKKEKSPSSPTKKTGDEVKEKS 1462
Query: 515 KGKSPTTALKNPT*P 471
KSPT K+P P
Sbjct: 1463 PPKSPTKKEKSPEKP 1477
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,961,434
Number of Sequences: 27780
Number of extensions: 328732
Number of successful extensions: 1074
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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