Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a13
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    55   8e-09
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    29   0.62 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   3.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.6  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 1/169 (0%)
 Frame = -1

Query: 580 FLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITA 401
           F+S +V  GL++   + P N         +L  F    G+++G  + + S     II+ A
Sbjct: 102 FISLVVLFGLIMKPYSYPRN-------YIFLFLFTALEGLTLGTAITFFSA---RIILEA 151

Query: 400 LLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXXXTSMSLMTLVNLFMQSH-FLYQAHLYL 224
           +  T  VFV  +A    + +  +            S+ L  L+  F+ S  F+  A    
Sbjct: 152 VFITLGVFVALTAFTFQS-KWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGF 210

Query: 223 GLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIIL 77
           G ++ CG++LFDT  I+   R   ++F+  +L L++DFI +F R++ IL
Sbjct: 211 GTLVFCGYILFDTYNIL--HRYSPEEFIMSSLMLYLDFINLFIRILQIL 257


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 292 MSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHAL 128
           +++ +  N  ++  FL+ A +   L+L+  F +    L +E RR  +KD V+  L
Sbjct: 328 LAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKLEMRRYNAKDDVRKVL 382


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = -1

Query: 679 RQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDN 521
           + ++ N+   + ++ + A+  V V++ TR    +   IVG  ++   + TP+N
Sbjct: 749 KTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGNSVVARTVYTPNN 801


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +3

Query: 300 NSVINVPPRNSQL--PRSASIAAAEKHTNTRV--VPSRAVIMIDGSTTLTYS--SRGPML 461
           N+ + +PPR +     R +++  +    ++ V  VPS +   ++  TT   S  SR PML
Sbjct: 318 NNPVYLPPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPML 377

Query: 462 MPDVNPNPS 488
           M    P PS
Sbjct: 378 MNPSTPEPS 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,173
Number of Sequences: 5004
Number of extensions: 59264
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)