Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt17a13
(679 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058377-1|AAL13606.1| 245|Drosophila melanogaster GH14327p pro... 177 2e-44
AE014296-1418|AAF50446.1| 245|Drosophila melanogaster CG7188-PA... 177 2e-44
AE014296-1419|AAN12018.1| 237|Drosophila melanogaster CG7188-PB... 172 3e-43
AY075204-1|AAL68072.1| 365|Drosophila melanogaster AT14090p pro... 44 3e-04
AE014297-619|AAF54013.2| 365|Drosophila melanogaster CG1287-PA ... 44 3e-04
BT009945-1|AAQ22414.1| 341|Drosophila melanogaster RH72958p pro... 36 0.051
AE014298-1546|AAF47994.1| 341|Drosophila melanogaster CG2076-PA... 36 0.051
M20231-1|AAA28720.1| 1135|Drosophila melanogaster protein ( D.me... 30 3.3
M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein ( D.me... 30 3.3
J03131-2|AAA28719.1| 1135|Drosophila melanogaster protein ( D.me... 30 3.3
J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein ( D.me... 30 3.3
AY119496-1|AAM50150.1| 1135|Drosophila melanogaster GH10824p pro... 30 3.3
AE014134-1264|AAF52505.1| 1135|Drosophila melanogaster CG5125-PA... 30 3.3
AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB... 30 3.3
AY069428-1|AAL39573.1| 844|Drosophila melanogaster LD13864p pro... 29 4.4
AE013599-91|AAF57324.2| 844|Drosophila melanogaster CG8426-PA p... 29 4.4
>AY058377-1|AAL13606.1| 245|Drosophila melanogaster GH14327p
protein.
Length = 245
Score = 177 bits (430), Expect = 2e-44
Identities = 87/207 (42%), Positives = 130/207 (62%)
Frame = -1
Query: 679 RQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLR 500
R+HL VY L T + + G + M G L+A+ L+L L D+GKN R
Sbjct: 28 REHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNYYTR 87
Query: 499 LGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXX 320
LG L FG SG ++GPLL Y+ ++P+II++AL GT + F+ S +A+LAE+G +
Sbjct: 88 LGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLG 147
Query: 319 XXXXXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFV 140
+M+L++L N+ +S+F+ LY+G+ +M F+++DTQ I+EK R G++D V
Sbjct: 148 GMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVV 207
Query: 139 QHALELFIDFIGMFRRLVIILTQKEEQ 59
QHAL+LF D + MFRRL+IILTQKEE+
Sbjct: 208 QHALDLFFDVLSMFRRLLIILTQKEER 234
>AE014296-1418|AAF50446.1| 245|Drosophila melanogaster CG7188-PA,
isoform A protein.
Length = 245
Score = 177 bits (430), Expect = 2e-44
Identities = 87/207 (42%), Positives = 130/207 (62%)
Frame = -1
Query: 679 RQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLR 500
R+HL VY L T + + G + M G L+A+ L+L L D+GKN R
Sbjct: 28 REHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNYYTR 87
Query: 499 LGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXX 320
LG L FG SG ++GPLL Y+ ++P+II++AL GT + F+ S +A+LAE+G +
Sbjct: 88 LGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLG 147
Query: 319 XXXXXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFV 140
+M+L++L N+ +S+F+ LY+G+ +M F+++DTQ I+EK R G++D V
Sbjct: 148 GMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVV 207
Query: 139 QHALELFIDFIGMFRRLVIILTQKEEQ 59
QHAL+LF D + MFRRL+IILTQKEE+
Sbjct: 208 QHALDLFFDVLSMFRRLLIILTQKEER 234
>AE014296-1419|AAN12018.1| 237|Drosophila melanogaster CG7188-PB,
isoform B protein.
Length = 237
Score = 172 bits (419), Expect = 3e-43
Identities = 85/204 (41%), Positives = 127/204 (62%)
Frame = -1
Query: 679 RQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLR 500
R+HL VY L T + + G + M G L+A+ L+L L D+GKN R
Sbjct: 28 REHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNYYTR 87
Query: 499 LGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXX 320
LG L FG SG ++GPLL Y+ ++P+II++AL GT + F+ S +A+LAE+G +
Sbjct: 88 LGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLG 147
Query: 319 XXXXXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSKDFV 140
+M+L++L N+ +S+F+ LY+G+ +M F+++DTQ I+EK R G++D V
Sbjct: 148 GMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVV 207
Query: 139 QHALELFIDFIGMFRRLVIILTQK 68
QHAL+LF D + MFRRL+IILTQK
Sbjct: 208 QHALDLFFDVLSMFRRLLIILTQK 231
>AY075204-1|AAL68072.1| 365|Drosophila melanogaster AT14090p
protein.
Length = 365
Score = 43.6 bits (98), Expect = 3e-04
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 13/212 (6%)
Frame = -1
Query: 655 ATLMMTCVSASAGVYVD--MFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLG 482
A+ +T SA A D M ++G+++++V GL+ ML + G G
Sbjct: 153 ASCGVTAASAVAFFQSDAMMALMTRSGWVASLVTLGLV-MLSGSIAQGLEYQPGFGAKQL 211
Query: 481 FGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXX 302
L +G +L + ++ I+ ALL T+ + S A A +
Sbjct: 212 AWLVHCAVLGAVLAPMCLLGGPILTKALLYTSGIVGALSTVAACAPSEKFLHMGGPLAIG 271
Query: 301 XTSMSLMTLVNLFMQSHF-----LYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSK---- 149
+ +L ++++ L LY GL+L GF+L+DTQ I++ + +
Sbjct: 272 LGVVFASSLASMWLPPTTAVGAGLASMSLYGGLILFSGFLLYDTQRIVKSAELYPQYSKF 331
Query: 148 --DFVQHALELFIDFIGMFRRLVIILTQKEEQ 59
D + HAL +++D + +F R+ IIL +++
Sbjct: 332 PYDPINHALAIYMDALNIFIRIAIILAGDQKR 363
>AE014297-619|AAF54013.2| 365|Drosophila melanogaster CG1287-PA
protein.
Length = 365
Score = 43.6 bits (98), Expect = 3e-04
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 13/212 (6%)
Frame = -1
Query: 655 ATLMMTCVSASAGVYVD--MFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLG 482
A+ +T SA A D M ++G+++++V GL+ ML + G G
Sbjct: 153 ASCGVTAASAVAFFQSDAMMALMTRSGWVASLVTLGLV-MLSGSIAQGLEYQPGFGAKQL 211
Query: 481 FGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWXXXXXXXXXX 302
L +G +L + ++ I+ ALL T+ + S A A +
Sbjct: 212 AWLVHCAVLGAVLAPMCLLGGPILTKALLYTSGIVGALSTVAACAPSEKFLHMGGPLAIG 271
Query: 301 XTSMSLMTLVNLFMQSHF-----LYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSK---- 149
+ +L ++++ L LY GL+L GF+L+DTQ I++ + +
Sbjct: 272 LGVVFASSLASMWLPPTTAVGAGLASMSLYGGLILFSGFLLYDTQRIVKSAELYPQYSKF 331
Query: 148 --DFVQHALELFIDFIGMFRRLVIILTQKEEQ 59
D + HAL +++D + +F R+ IIL +++
Sbjct: 332 PYDPINHALAIYMDALNIFIRIAIILAGDQKR 363
>BT009945-1|AAQ22414.1| 341|Drosophila melanogaster RH72958p
protein.
Length = 341
Score = 35.9 bits (79), Expect = 0.051
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = -1
Query: 232 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILT 74
LY GL+L GF+L+DTQ ++ + + + D + ++ +++D + +F R+V IL+
Sbjct: 277 LYGGLVLFSGFLLYDTQRMVRRAEVYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILS 335
>AE014298-1546|AAF47994.1| 341|Drosophila melanogaster CG2076-PA
protein.
Length = 341
Score = 35.9 bits (79), Expect = 0.051
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = -1
Query: 232 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILT 74
LY GL+L GF+L+DTQ ++ + + + D + ++ +++D + +F R+V IL+
Sbjct: 277 LYGGLVLFSGFLLYDTQRMVRRAEVYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILS 335
>M20231-1|AAA28720.1| 1135|Drosophila melanogaster protein (
D.melanogaster ninaCencoded short protein mRNA, complete
cds. ).
Length = 1135
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 613 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 458
Y+ R G + + + A LML+ TP N +T L Y L FG T MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495
>M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein (
D.melanogaster ninaCencoded long protein mRNA, complete
cds. ).
Length = 1501
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 613 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 458
Y+ R G + + + A LML+ TP N +T L Y L FG T MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495
>J03131-2|AAA28719.1| 1135|Drosophila melanogaster protein (
D.melanogaster ninaCprotein genes, complete cds. ).
Length = 1135
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 613 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 458
Y+ R G + + + A LML+ TP N +T L Y L FG T MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495
>J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein (
D.melanogaster ninaCprotein genes, complete cds. ).
Length = 1501
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 613 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 458
Y+ R G + + + A LML+ TP N +T L Y L FG T MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495
>AY119496-1|AAM50150.1| 1135|Drosophila melanogaster GH10824p
protein.
Length = 1135
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 613 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 458
Y+ R G + + + A LML+ TP N +T L Y L FG T MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495
>AE014134-1264|AAF52505.1| 1135|Drosophila melanogaster CG5125-PA,
isoform A protein.
Length = 1135
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 613 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 458
Y+ R G + + + A LML+ TP N +T L Y L FG T MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495
>AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB,
isoform B protein.
Length = 1501
Score = 29.9 bits (64), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 613 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 458
Y+ R G + + + A LML+ TP N +T L Y L FG T MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495
>AY069428-1|AAL39573.1| 844|Drosophila melanogaster LD13864p
protein.
Length = 844
Score = 29.5 bits (63), Expect = 4.4
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 285 SDIDVNSVIN-VPPRNSQ-LPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPM 458
SD VN +++ P +N Q LP +ASI A + + S + G++ S P
Sbjct: 383 SDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPG 442
Query: 459 LMPDVNPN 482
P V PN
Sbjct: 443 NNPAVQPN 450
>AE013599-91|AAF57324.2| 844|Drosophila melanogaster CG8426-PA
protein.
Length = 844
Score = 29.5 bits (63), Expect = 4.4
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 285 SDIDVNSVIN-VPPRNSQ-LPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPM 458
SD VN +++ P +N Q LP +ASI A + + S + G++ S P
Sbjct: 383 SDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPG 442
Query: 459 LMPDVNPN 482
P V PN
Sbjct: 443 NNPAVQPN 450
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,714,809
Number of Sequences: 53049
Number of extensions: 690428
Number of successful extensions: 1833
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1831
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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