Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a11
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    48   1e-06
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    38   0.002
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    31   0.15 
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    30   0.47 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.82 
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    29   1.1  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    28   1.9  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    28   1.9  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.3  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.4  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    27   4.4  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   5.8  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = -3

Query: 836 LTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
           L+ EEV +MIREAD DGDG +NYEEF  +++SK
Sbjct: 118 LSQEEVADMIREADTDGDGVINYEEFSRVISSK 150



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -3

Query: 833 TDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
           T  E+ +MI E D DG+G +++ EF+TMM  K
Sbjct: 46  TAAELQDMINEVDADGNGTIDFTEFLTMMARK 77



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 830 DEEVDEMIREADIDGDGQVNYEEFVTMMTS 741
           +EEV E  +  D DG+G +  EE   ++TS
Sbjct: 84  EEEVREAFKVFDKDGNGYITVEELTHVLTS 113


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 13/30 (43%), Positives = 23/30 (76%)
 Frame = -3

Query: 836 LTDEEVDEMIREADIDGDGQVNYEEFVTMM 747
           + D+E++ MI E D+D DG++N +EF+ +M
Sbjct: 143 IDDQELEAMIEEFDLDQDGEINEQEFIAIM 172


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -3

Query: 836 LTDEEVDEMIREADIDGDGQVNYEEFVTMM 747
           L++EE+DE+++   +  DG VNY +FV M+
Sbjct: 110 LSNEEMDELLKGVPVK-DGMVNYHDFVQMI 138


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 836 LTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 738
           L+D EV  M++EAD    G  +Y +FV  + +K
Sbjct: 111 LSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 827 EEVDEMIREADIDGDGQVNYEEFV 756
           +EV E IRE ++D  G+V  E+FV
Sbjct: 54  DEVREAIREVNVDSSGRVEPEDFV 77


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 821 VDEMIREADIDGDGQVNYEEF 759
           VD+ I E D D DG++++EEF
Sbjct: 136 VDKTIMEVDKDRDGKISFEEF 156


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 827 EEVDEMIREADIDGDGQVNYEEFVTMMTS 741
           +E+ E     D DGDG +  E+  TM+TS
Sbjct: 48  QELKEAFALLDKDGDGNIGREDVKTMLTS 76


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 651 SNTMLILCVMKQNVYLNSLLFTHTLAGGSLRRHHGDE 761
           S T+L + +M QN +LN+  F H  A  + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 106 ISIVGKNLILSKWKV---NPLCYYLTTFDSFCYKI 11
           +S + KN +L   K+    P+C+ +T + SF Y I
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAI 382


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 479 KGKTSGVRRNVMV*VSGSCRLLTYICVYVCVRASVRGARTFRCIHYIYL*ST 324
           +  + G+R ++     GS R+LT+    + +R +   A  F  IH+  L ST
Sbjct: 9   QSSSKGLRSSIFF--QGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQST 58


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 121 LSHLHKYNYNAVSINL 168
           +S+LH Y YNA++INL
Sbjct: 189 VSNLHGYTYNALNINL 204


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 836 LTDEEVDEMIREADIDGDGQVNYEEFVTMM 747
           L+ ++++++   ADID DG  +++EF   M
Sbjct: 37  LSSDKLEKIWDLADIDDDGMFDFDEFAIAM 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,572
Number of Sequences: 5004
Number of extensions: 55505
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)