Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt17a10
         (277 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270...    27   2.8  
04_04_0845 - 28646547-28646637,28646724-28646854,28647832-286479...    25   8.7  

>02_05_0287 -
           27525722-27525812,27525927-27526057,27526945-27527022,
           27527080-27527186,27527302-27527380,27528001-27528096,
           27528192-27528443,27528691-27528840,27528953-27529277,
           27529373-27529584
          Length = 506

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 186 VGRMAXYTSFPXGLFFFFNQP-KXFEEWXTNTKRQIF 79
           VGR    T+ P   ++ F Q  K FE W  +T  +IF
Sbjct: 81  VGRPVVVTADPEMNYYVFQQEGKLFESWYPDTFTEIF 117


>04_04_0845 -
           28646547-28646637,28646724-28646854,28647832-28647938,
           28648043-28648121,28648578-28648667,28648814-28649065,
           28649367-28649519,28649631-28649955,28650069-28650283
          Length = 480

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 186 VGRMAXYTSFPXGLFFFFNQP-KXFEEWXTNTKRQIF 79
           VGR    ++ P   ++ F Q  K FE W  +T  +IF
Sbjct: 82  VGRPVVVSADPEMNYYVFQQEGKLFESWYPDTFTEIF 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,962,202
Number of Sequences: 37544
Number of extensions: 68479
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)